Gene Bphyt_3522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3522 
SymbolprfA 
ID6282850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3967244 
End bp3968326 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content63% 
IMG OID642623101 
Productpeptide chain release factor 1 
Protein accessionYP_001897136 
Protein GI187925494 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.217548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.148888 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACGA GCATGCAACG CAAGCTCGAC CAGCTCACTA CCCGGCTGGC CGAACTGAAC 
GATCTGTTGA GCCGCGAGGA CATCACCTCG AATCTCGACC AATACCGCAA GCTCACGCGG
GAACACGCTG AGCTCGGGCC GGTGGTGGAC CACTACGCGC TATGGCGCCA GGCCATGAAC
GACGCAACCA CCGCTCAGGA ATTGCTGGCG GATGCGTCGA TGCGCGACTT CGCCGAAGAC
GAAATTCGCG CCGCCCGCGA GCGCATGGAA AAGCTCGGCG CCGAGTTGCA GAAAATGCTG
CTGCCGAAAG ACCCGAACGA CGACCGCAAC ATCTTCCTCG AAATCCGCGC TGGAACGGGC
GGCGATGAGT CCGCGCTGTT CGCGGGCGAC CTGCTGCGCA TGTACCTGCG CTTTGCCGAG
CGCAACCGTT GGCAAGTGGA AATGATGTCG GCGAGCGAGT CGGACCTGGG CGGCTACAAG
GAAGTGATCG TGCGGATCGC GGGCGAAGCC GCTTATTCGA AGCTCAAGTT CGAGTCTGGC
GGCCACCGCG TGCAACGCGT GCCGGCGACC GAAACCCAAG GGCGCATCCA CACGTCGGCC
TGCACGGTCG CGGTCATGCC GGAAGCGGAC GAAATCGGTG AAGTCGAGAT CAATCCGGCG
GATTTGCGGA TCGACACGTT CCGCGCGTCC GGCGCGGGCG GGCAACACAT CAACAAGACC
GATTCCGCCG TGCGCGTCAC CCACTTGCCG ACGGGGATCG TCGTCGAATG TCAGGACGAC
CGGTCGCAGC ACAAGAACAA GGATCGCGCG CTGAAGGTGC TGGCCGCGCG CATCAAAGAC
AAGCAATCGC ACGAGCAGCA GGCGAAGGAA GCCGCCACGC GCAAGAGCCT GATCGGCTCG
GGCGACCGCT CCGAGCGGAT TCGCACGTAC AACTTCCCGC AAGGGCGTCT GACGGATCAT
CGCATCAACC TGACGCTGTA CCGTCTGGAC GCGATCATGG ACGGCGATCT CGACGAACTG
ATCGCCGCGC TCGTCAGCGA ACATCAGGCC GAACTGCTGG CCTCGCTGGG CGACGCGGAC
TGA
 
Protein sequence
MKTSMQRKLD QLTTRLAELN DLLSREDITS NLDQYRKLTR EHAELGPVVD HYALWRQAMN 
DATTAQELLA DASMRDFAED EIRAARERME KLGAELQKML LPKDPNDDRN IFLEIRAGTG
GDESALFAGD LLRMYLRFAE RNRWQVEMMS ASESDLGGYK EVIVRIAGEA AYSKLKFESG
GHRVQRVPAT ETQGRIHTSA CTVAVMPEAD EIGEVEINPA DLRIDTFRAS GAGGQHINKT
DSAVRVTHLP TGIVVECQDD RSQHKNKDRA LKVLAARIKD KQSHEQQAKE AATRKSLIGS
GDRSERIRTY NFPQGRLTDH RINLTLYRLD AIMDGDLDEL IAALVSEHQA ELLASLGDAD