| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6550 |
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| Symbol | |
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| ID | 4454406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008544 |
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| Strand | + |
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| Start bp | 776318 |
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| End bp | 778003 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639698613 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_840173 |
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| Protein GI | 116686926 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.984668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACGA TGCATCGACG CGGCCGTTGC CGACATTCGC TACCCGCACG CGGAATCGCC
GCGATGCTCG CCGCCTGCGC GGTGCTTGCG GGCTGTACCG TCGGACCGGA TTTCAAGCCG
CCGCAGGCGG ACGCGCCGGC CAACTGGCAT GACTTGCAGG CCGCGGACGC GGCATCGCCG
GCATCGGGCG CGTCAGCGGC ATCGGCTGCA TCAGCGGCAT CGGCCCCCGG CGCACATGCG
CCATCGTCGC CGGTGACGAG CGCCGATCCC GATCCGCGCT GGTGGCGCGC GTTCGGCGAT
CCGCTGCTCG ACCAGCTCGT CGAGCGCGCC GCGCATGACA ACCTCGACGT GCAGGCCGCC
GTGCTGCGCA TCGCCCAGGC GCGCGCGCAG ATCCGCGCGG CCGCCGCGCA GGGTTTGCCG
GACGTGCGTG CGACCGCGAG CTACCAGCGC GAACAACTCG GCCTGAAAGG GATCGTCGAG
GAGCAGGGCA TCGACCAGCG GGTCGATCGT CTCGGCGCGC CGGGCTCGCC GCTCGACCGG
TTCGGGCCGG GCACCGGCGC GAGCGTGCAG CAAGGCGCGC GCGGCGCGCT CGATGCGCTC
GAAGCGCCGG TCAACCTGTG GCAGGCCGGG TTCGACGCAT CGTGGGAGCT GGACCTGTTC
GGCCGGGTGC GCCGCTCGGT CGAAGCGGCC GGCGCGCAGG CGAGCGCGGC GATCGCGAGC
CGCGACGATG CGCTGCTGTC GCTGGAAGCC GAAGTCGCGC AGACCTATCT GCAACTGCGC
GGCGCGCAAG CGCAGCGCGC GCTGGCCGAC GATCTGCAAC GCGCGCAGCG GGAACTGCTC
GACCTGACGC GCGAGCAGGC CGCGCACGGT CTCGCGAGCG ATCTCGACGT GCGCAGCGCC
GAGGCGCGGC TCGCGCAGAT CCGCACGCAA CTGCCGCAGT TCGACCAGCA GATCGTGCTG
CTGCGCAACG GTCTCGCGTA TCTGGTGGGC GGCGCGCCGG GCGCGCTCGA CGACTGGCTC
GACGCGCCGC GCGCGTTGCC GGACGTGCCG CCGGCCGTGC CCGTCGGGCT GCCGTCGACG
CTCGCGCGCC GGCGCCCCGA CATCCGCCGC GCGGAGGCCG AGCTGCATGC GGCCACCGCC
GACGTCGGCG TCGCGGTCGC GCAGTTCTAT CCGGACATCT CGTTGACGGG GCAAGTCGGG
TTGCGTGCGT CGCACGTGCG CGAGCTCGCG CACTGGTCGC ACCTGTTCTA TTCGTTCGGA
CCGGCCGTCT CGCTGCCGAT CTTCTCCGGC GGGCAGCTCG TGTCGAACCT GCGGCTGTCG
CAGGCGCGCC AGGCGGAAGC GGCGCTCGCC TACCGCCAGG CCGTGCTCGT CGCGCTGCGC
GACGTCGACA ATGCGCTGGC CGTGTACCGC ACCGACCAGG CGCGCGCGGC CGCGCTCGAC
GATGCGGTGA AGGCCGAACA GGGCGCGCTG GATCTCGCAC GCGATCGCTA CAGGAAAGGG
CTGTCGCCGT TCCTCGACGT GCTGGACGCC GAGCGGCAAT GGTCGGAAGG CCGGCAGCAG
GCCGAGCAGG GCGCGTTGCA GAAGACGACC GATCTCGTCG CGCTGTACAA GGCGCTCGGC
GGCGGATGGG AGGCCGGCTC GGGCACGAAC TCGGATGCGG GGGCAGAGGC GGCACGCACC
AGATAG
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| Protein sequence | MMTMHRRGRC RHSLPARGIA AMLAACAVLA GCTVGPDFKP PQADAPANWH DLQAADAASP
ASGASAASAA SAASAPGAHA PSSPVTSADP DPRWWRAFGD PLLDQLVERA AHDNLDVQAA
VLRIAQARAQ IRAAAAQGLP DVRATASYQR EQLGLKGIVE EQGIDQRVDR LGAPGSPLDR
FGPGTGASVQ QGARGALDAL EAPVNLWQAG FDASWELDLF GRVRRSVEAA GAQASAAIAS
RDDALLSLEA EVAQTYLQLR GAQAQRALAD DLQRAQRELL DLTREQAAHG LASDLDVRSA
EARLAQIRTQ LPQFDQQIVL LRNGLAYLVG GAPGALDDWL DAPRALPDVP PAVPVGLPST
LARRRPDIRR AEAELHAATA DVGVAVAQFY PDISLTGQVG LRASHVRELA HWSHLFYSFG
PAVSLPIFSG GQLVSNLRLS QARQAEAALA YRQAVLVALR DVDNALAVYR TDQARAAALD
DAVKAEQGAL DLARDRYRKG LSPFLDVLDA ERQWSEGRQQ AEQGALQKTT DLVALYKALG
GGWEAGSGTN SDAGAEAART R
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