| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5913 |
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| Symbol | |
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| ID | 4314818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | + |
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| Start bp | 395624 |
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| End bp | 396538 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 638153753 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_777792 |
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| Protein GI | 115360655 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.705052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00175054 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGCCCG CCTCGTTCGT TACGCCGCTC GCCCCCCCCG AACTCCCCGC GCACGACCCG
GCTGATACCG CGCCGCTCCG GCTCGGCCTG ATCGGTGCCG GCATCGCCCA GTCGCGCTCG
CCGGCGCTGC ACGAGGGCGA GGCCGCCGCG CGCGGCCTGC CCTGCCGCTA TGCGCTGCTC
GATCTCGACC GGCTCGGGAT CGGCGTCGAC GGGCTCGACG GCCTACTGCG CCGCCTCGAG
GACGAAGGCT GGGTCGGCGT GAACATCACG CTGCCGTGCA AGCAGGCGGT GATCCCGCTG
CTCGACGAAG TCGCGCCCGA GGCCGCCGCG ATCGGCGCCG TCAACACGGT GCGCTTCGCG
GCCGGCCGGC GCATCGGCTA CAACACTGAC GCCCATGGCT TCGGCCAGGG CTTTCGCAGC
GGCCTGCCCG GGGCGCGGCG CGAGCGCGTG GTGCAGTTCG GCGCGGGCGG CGCCGGCGCG
GCCACCGCCT TCGCGCTACT CGAACTCGGG GCAACGCGGC TGACGCTCGT CGACGAGGTG
CCGGCGCGCG CCGCCGCGCT CGCCGCGCAG CTCGGCCGGC ATTTTCCGGC CTGCCGCATC
GACGCACCCG AGCACGCCGA GGCCGCGCTC GGCACGGCCG ACGGCGTGGT CAACGCCACG
CCGGTCGGCA CCGCGCGCCA TCCCGGCTCG GCCGTGCCGC TCGATGCGCT GCATGCGGGC
CTGTGGGTCG CCGATGTGAT CTACGCGCCC GCCGAAACGC TGCTGCTGCG CAGCGCGCGC
GCCCTGGGCT GCCAGACGCT CGACGGCACG CACATGCTGG TGGTGCAGGC CGCGCGCGCC
TTCGAGCTGT TCACCGGCTG CCGCGCCGAT GTGGCGCGCA TGCTCGAGCG CTTCCGCGCG
GCATCCGCGC CCTGA
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| Protein sequence | MTPASFVTPL APPELPAHDP ADTAPLRLGL IGAGIAQSRS PALHEGEAAA RGLPCRYALL
DLDRLGIGVD GLDGLLRRLE DEGWVGVNIT LPCKQAVIPL LDEVAPEAAA IGAVNTVRFA
AGRRIGYNTD AHGFGQGFRS GLPGARRERV VQFGAGGAGA ATAFALLELG ATRLTLVDEV
PARAAALAAQ LGRHFPACRI DAPEHAEAAL GTADGVVNAT PVGTARHPGS AVPLDALHAG
LWVADVIYAP AETLLLRSAR ALGCQTLDGT HMLVVQAARA FELFTGCRAD VARMLERFRA
ASAP
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