| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5420 |
|---|
| Symbol | |
|---|
| ID | 4314309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2467474 |
|---|
| End bp | 2469705 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153261 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_777301 |
|---|
| Protein GI | 115360163 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00589363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGA ATAGAACAAC AGCGGCGCCC GCACGGCGGC GGCGCGCGAA GGTCGGCGCG
GGCATCGGTC TCGGCATCAC GCTTTTCGCG GCGCAGGCCG CCGCGGCACA GGGCGACGCG
CCGGCTCCCG AAGCCGATGT GGCCGCCAGC GCGACGCTGC CGGCGATCGC GATCAGCGGC
GAGCGCGGCG GCGCGTTTCG CGCGCGCGAA GCGTCGGTCG CGGGGCTCGA CGACGCGCCG
CTGCGCGACA CGCCGGCCTC CGTCAGCGTC GTCACGCGCG CGCAGCTCGA CGACCAGCAG
GCCAAGCGCC TGAGCGACGT GGTGCGCAAC GATGCGTCGG TCGTCAACGA CTACGCGCCC
GTTGGCTACT TCGAAGGATT CGCGATTCGC GGCTTCCCGG TGGATCTCGC GAGCGCGATC
CGGATTGACG GGCTGACGGT ATCCGGCGAG CAGAACGTGC CGCTCGAGAA CAAGGAGCGC
GTCGAGATCC TGAAGGGGCT GGCCGGCATC GACAGCGGCG TGGTCGCGCC GGGCGGCGTG
ATCAACTTCG TGACGAAGCG CTCGGCGAAC GTCGCGAGCG TGACGACCGG CGTCGACAGC
CGCGGCTCGA CGTCGGCGGC CGTCGATCTC GGCCGCCGCT TCGGCCCCGA CCACCAGTTC
GGATTCCGGA TCAATGCCGC GAAGGAGAAC ATGCACTCGT ACATCGACGG CACGAACGGA
CGGCGCACGT TCGGCTCGAT CGCCGCCGAC TGGGACATCA GCCCGCGCGC GAGCCTGCAG
TTCAACGCGG AATTCCAGCA GTGGATCCAG CGTTCCGCAC CCGGTTACCA GCTGCTCGGC
GGCACCGTCG TGCCGTCCGT CAACACGACG TCGAAGGCGC TCGGCACGCA GCCGTGGGCG
AAGCCGGTGA CGACCGACGC GCTGAACCTG AACGCGCGCT TCGACTACCG GTTCAACGAC
GACTGGAACG CCTACATCGC CGCGGGCCGC AGCCGCACGA TGATCGACGA CAACAGCGCG
TTCGCGTATG GCTGCTATTA CGCGCCGAGC TGCACGGCCG GCGCGACGTC GCCGTTCTTC
TTCGGCGCGA ACGGCGACTA CGACGTGTAC GACTTCCGCA GCCCCGGCGA ATACCGCCGC
AACGACGACC TGCGCGCGGT GACGACGGGC AAGTTCGCGA CGGGGCCGCT GCACCACGAG
CTGACGCTCG GCGTGAGCGT GCAGCGCCGC GTCGTGCACA TGGCGAACGC CGTGTACGAC
TACGTCGGCA GCGAGAACAT CTACGGGCCC GACATCGCGT TCGCGCCGTC GCCGAACACG
GCCGGGTCGT CGTATCCGCA GCTCGATTCC TGGCAATACG GCGTGTTCGG GCTCGACCGC
ATCAGCATCG GCGATCATTG GCAGGTGCTC GCGGGCGGCA AGGAGGTGCT GCTGCGCCAG
CGCAGCTGGA GCAGCCTCGA CGGCGACGCG ACGCACACCG ACCGCTCGGT CTTCCTGCCG
CAGGTCGCGC TCGTCTACAA GCCGGTGAAC GTGCTGTCGC TGTATGCGTC GTACAGCAAG
GCGCTGTCGC TCGGCGACCA GGCGCCGGTG CGCGCGACCA ACGCGTATGC GTTCCTGCCG
CCGGTCGAAT CGCACCAGTT CGAGCTCGGC GCGAAATACG ACTGGCTCGA CCGGCTCAGC
CTGACGGCCG CCGTGTTCTC GATCAGCAAG CCGTTCCAGT TCGCCGACCC CGATACGTCC
GGCACGAGCT ACACGTTCGT GCAGCGCGGC ACGCAGCGCC ACCAGGGGAT CGAGCTCGGC
GCAGCCGGGC GCGTGACCGA GCGGCTGTCG CTGACGGCCA GCGTCGCGGC GATTCGCGCG
CGCGCGTACG ATTCGGGTTC GCCGGCGTAC GAAGGGCACC AGATCATCAA CGTGCCGGCG
CTGCGCGCGT CGCTGTACGC GGATTACGCG GTGCCGGGCG TCGCGGGGCT GAACATGCTG
GGCGGCGTCG AGTACAGCGG CGGCCGCAAC GCGAACGAAG AGGGCACCGC GCGCGTGCCG
TCGTGGTTCG TGTTCAATCT CGGCGCGCGC TATACGACGA AGATCGGCGG CCATCGCACC
GTGCTGCGTG TGTCGGTGGA CAACCTGTTC AACAAGTTCT ACTGGCGCGA CGCGGGCGAG
CAGCAGGGCG ACGCGTATCT GTTCCCGGGC GCGCCGCGCA CCGCGCGCGT GTCGCTGACC
TATGATTTCT GA
|
|---|
| Protein sequence | MTVNRTTAAP ARRRRAKVGA GIGLGITLFA AQAAAAQGDA PAPEADVAAS ATLPAIAISG
ERGGAFRARE ASVAGLDDAP LRDTPASVSV VTRAQLDDQQ AKRLSDVVRN DASVVNDYAP
VGYFEGFAIR GFPVDLASAI RIDGLTVSGE QNVPLENKER VEILKGLAGI DSGVVAPGGV
INFVTKRSAN VASVTTGVDS RGSTSAAVDL GRRFGPDHQF GFRINAAKEN MHSYIDGTNG
RRTFGSIAAD WDISPRASLQ FNAEFQQWIQ RSAPGYQLLG GTVVPSVNTT SKALGTQPWA
KPVTTDALNL NARFDYRFND DWNAYIAAGR SRTMIDDNSA FAYGCYYAPS CTAGATSPFF
FGANGDYDVY DFRSPGEYRR NDDLRAVTTG KFATGPLHHE LTLGVSVQRR VVHMANAVYD
YVGSENIYGP DIAFAPSPNT AGSSYPQLDS WQYGVFGLDR ISIGDHWQVL AGGKEVLLRQ
RSWSSLDGDA THTDRSVFLP QVALVYKPVN VLSLYASYSK ALSLGDQAPV RATNAYAFLP
PVESHQFELG AKYDWLDRLS LTAAVFSISK PFQFADPDTS GTSYTFVQRG TQRHQGIELG
AAGRVTERLS LTASVAAIRA RAYDSGSPAY EGHQIINVPA LRASLYADYA VPGVAGLNML
GGVEYSGGRN ANEEGTARVP SWFVFNLGAR YTTKIGGHRT VLRVSVDNLF NKFYWRDAGE
QQGDAYLFPG APRTARVSLT YDF
|
|---|
| |