Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5106 |
Symbol | |
ID | 4313997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 2133657 |
End bp | 2134535 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638152949 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_776989 |
Protein GI | 115359851 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0140126 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0019989 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTTCTCG ATCATCTTCA TCCGGAACGC TGGACGTTCC TGTGGAACGC GTTGTCCACG CTTTCGCTCA GGCTTTGCGC CGCCCTCGCG CTACTCGTCG CGGGCTGGTG GCTGTCGAAG CGCATCGGCA ACTGGCTGAG CCGGCTGCTC ACGAACAAGG AGCGCGTGGA CGACACGCTG CGGCCGATCC TCTGCGACGT CGCCGTATGG GGCATCCGCA TCGTCGCGAT CGTCGGTGCG CTTTCACAGC TCGGCATCGA AACCGCGAGC ATCGTCGCGG TGCTCGGCGC GGCCGGCCTC GCGATCGGGC TCGCGCTGCA AGGCACGATG CAGAACATCG CGGCCGGCAT CATGCTGTTG CTGCTGCGGC CGTTCAAGGT GGGCGACTAC ATCGACGGCG GCACGGGTGT CGCGGGCACG GTCGACGAGG TCGGGCTCTT CATGACGCGG CTGACGAAGC CGGACGGCAT CTGCGAATAC GTGCCGAACA GCGCGCTGTG GGGCAGCGCG ATCCGCAACT ACACGCGCAA TCCGACCCGC CGTCTCGATC TCGAAGTGGA AGTGTCCGTG CACGACGACA TCGATCGTGC GCTCGATGCG CTGCGCGCGC TGGCCGAAAC CGATCCCGAC GTGCTGAAGG ATCCCGCGCC GGACGTGATG GTGATGCGCT TCGACGACAG CACGGCGGTC GCGAACATGC GCGTATGGAC GCACACCGAC AAGTTCTGGG CGATGCGCTG GCGCCTCGCG CGCCAGGTGC GCAAGACGCT CGCGGACGCG GACTGCGCGC TGCCGATCCG CACGCGCGAG CTGCACATCG TGCACGACGT CGAACGGCAG CCGCAGCAGA TCGAGCCGCG CCGCGTACAG GCGTCGTGA
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Protein sequence | MFLDHLHPER WTFLWNALST LSLRLCAALA LLVAGWWLSK RIGNWLSRLL TNKERVDDTL RPILCDVAVW GIRIVAIVGA LSQLGIETAS IVAVLGAAGL AIGLALQGTM QNIAAGIMLL LLRPFKVGDY IDGGTGVAGT VDEVGLFMTR LTKPDGICEY VPNSALWGSA IRNYTRNPTR RLDLEVEVSV HDDIDRALDA LRALAETDPD VLKDPAPDVM VMRFDDSTAV ANMRVWTHTD KFWAMRWRLA RQVRKTLADA DCALPIRTRE LHIVHDVERQ PQQIEPRRVQ AS
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