| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5104 |
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| Symbol | |
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| ID | 4313995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 2131355 |
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| End bp | 2132392 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638152947 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_776987 |
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| Protein GI | 115359849 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00214422 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTCACGG TCTACAGCAG CGATCACCAT CTGCATCGCG GCGTCGAACT GAAGGACGGC
GCGATCACCG AGTCGTTCGA GAACCCCCTG CGCGCCGAGA CGGTGCTCGC GCAGGTGCGC
GCGGCCGGAC TCGGCGACGT GATCGCGCCG CGCGCGTTCG ACCGCGCGTG CTATGCCGCC
GCGCACAGCG CCCGCTATGT CGAGTTCCTC GCCGGCGCGT GGGACGAATG GACCGCGACC
GGCCGTACCT GCCAGGCGCT GCCGCTCGTG TGGCCGGTGC GCGCGATGCC GTCGTCGGCG
ACGCTGCCCG AGTTCATCGA CGGCAAGCTC GGCTTCTTCG CGATGGACGC CGGCGCGCCG
ATCAACGCCG GCACGTGGGC CGCGGTGAGC GCGAGCGCGA ACTCGGCGCT CACGGGCGCC
GACCTGCTGT CGAACGGCGG CGCGCGCGCG GCGTTCGCGC TGTGCCGGCC GCCCGGCCAC
CATGCGGGCC GCGAGTACAT GGGCGGCTAC TGCTACCTGA ACAACGCGGC GATCGCCGCG
CAGCACGGCA TCGCGAGCGG CGCGGCGCGC GTCGCGGTGC TCGACGTCGA CTTCCACCAC
GGCAACGGCA CGCAGGACAT TTTCTACGAC CGCGCGGACG TGCTGTTCGC GTCGACCCAC
GGCGAGCCGC CGGTGTCGTA TCCGTACTTC TCCGGCTACG CGCACGAGCG CGGCAGCGGC
GCGGGCGAGG GTTTCAACCT GAACCTGCCG CTGCCGAAGG GCACGCAGTG GGACACCTAC
GCGGCGGCGC TCGACCACGC AGCCGCCGCG ATCGCCGCGC ATGCGCCCGA CCTGCTCGTC
GTGTCGCTCG GCGTCGACAC GTTCGAGCAC GACCCGATCA GTCATTTCCG CCTGCGCTCG
CCCGACTACC TGCGCGTCGG CGAAGCGCTC GCGCGCCTGA ACCTGCCGAC GCTGTTCGTG
ATGGAAGGCG GCTACATGGT CGACGAAATC GGTATCAACG CGGTGAACGT GCTGCTCGGT
TTCGAAGGGC GCGCGTGA
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| Protein sequence | MLTVYSSDHH LHRGVELKDG AITESFENPL RAETVLAQVR AAGLGDVIAP RAFDRACYAA
AHSARYVEFL AGAWDEWTAT GRTCQALPLV WPVRAMPSSA TLPEFIDGKL GFFAMDAGAP
INAGTWAAVS ASANSALTGA DLLSNGGARA AFALCRPPGH HAGREYMGGY CYLNNAAIAA
QHGIASGAAR VAVLDVDFHH GNGTQDIFYD RADVLFASTH GEPPVSYPYF SGYAHERGSG
AGEGFNLNLP LPKGTQWDTY AAALDHAAAA IAAHAPDLLV VSLGVDTFEH DPISHFRLRS
PDYLRVGEAL ARLNLPTLFV MEGGYMVDEI GINAVNVLLG FEGRA
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