| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5685 |
|---|
| Symbol | |
|---|
| ID | 6182095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 195074 |
|---|
| End bp | 196147 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641688817 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001815681 |
|---|
| Protein GI | 172064969 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.523942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0446871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTGC AGATCCCGCG CGCCCGATTT CGGGCAGGAT TCCTGATGGC CGGCGCGGCA
GGCGCCATTG GCACCGCGCC GCTCGCGCAC GCGCAGTCGA GCGTGACGCT GTATGGCGTC
GCGGACGCTT TCGTCGGTTC GGTGAAGCAA CCCGGCGGGC GCACGGCGCT CGTGCAGTCG
GGCGGCGGGA TGACGACGTC GTTCTGGGGG CTCGGCGGCA GCGAGGATCT CGGCAACGGC
AACAAGGCGT TCTTCGTGCT CGAAAGCTAC TTTCAACCGC AAAGCGGCGC GTACGGCCGC
TACGCCGGGG ACAGCCTGTT TTCGCGCAAT GCGTACGCGG GATTGCAGAC GCGGTTCGGC
CAGCTTCGTC TTGGCCGGAT CACGACGCCG CTGTATCTCG CGACGATCCA GTTCAACCCG
CTGTTCAATT CGTACACGTT CTCGCCGATG ATCTTCCACA CGTTCAAGGG CGTGGGCGCC
GAGGGCGTGG TCGGCGATTC GGCGTGGAAC AACGCGCTCG CCTATACGAG CCCGACGTTC
GGCGGATTCA ATGCGGGGCT GCTGTATGCA CTCGGCAATA CGGCCGGCCG GAACGGCGCG
AAGAAATGGA GCGTCAACGC GAACTACGCG CGCGGCGCGT TCGCGGCCGC CGTGGTCTTC
CAGTACGTGA ATTTCAGCGC GACGCCTGGC GATCTCGACG GCGCGCTCGC CGCGGCGCCG
GGCCTGTCGA GCCAGCGCAC GGTGCAGGTC GGCGCGTTGT ACGACTGGCG TGTCGTGAAG
CTGTTCGCGC AGTACATGAA CGTCGCGAAC CGCGCGCAGC GCGGCAACTT CCACGGGGAT
ACGCTGCAGG CCGGCGTCAG CGTGCCGATC GGCGTGGGTT CGCTGCTGGC GAGCTACGCG
TATACGCATT CGAGCGGGGC GCTCGCCGAC GGCGCGCATC GCAGCACCGG CGCGCTCGGC
TACGACTATC TGCTGTCGAA GCGCACCGAC CTCTATTCGG CGATCAAGGT CGATCACGTC
GGCGGGCTGT CGACCGGCAT CACGTACGGC GCGGGCCTGC GCACGCGCTT CTGA
|
|---|
| Protein sequence | MTLQIPRARF RAGFLMAGAA GAIGTAPLAH AQSSVTLYGV ADAFVGSVKQ PGGRTALVQS
GGGMTTSFWG LGGSEDLGNG NKAFFVLESY FQPQSGAYGR YAGDSLFSRN AYAGLQTRFG
QLRLGRITTP LYLATIQFNP LFNSYTFSPM IFHTFKGVGA EGVVGDSAWN NALAYTSPTF
GGFNAGLLYA LGNTAGRNGA KKWSVNANYA RGAFAAAVVF QYVNFSATPG DLDGALAAAP
GLSSQRTVQV GALYDWRVVK LFAQYMNVAN RAQRGNFHGD TLQAGVSVPI GVGSLLASYA
YTHSSGALAD GAHRSTGALG YDYLLSKRTD LYSAIKVDHV GGLSTGITYG AGLRTRF
|
|---|
| |