Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMASAVP1_1309 |
Symbol | |
ID | 4678093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei SAVP1 |
Kingdom | Bacteria |
Replicon accession | NC_008784 |
Strand | - |
Start bp | 1299977 |
End bp | 1303192 |
Gene Length | 3216 bp |
Protein Length | 1071 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639843826 |
Product | RND efflux system, cytoplasmic membrane extrusion protein |
Protein accession | YP_990906 |
Protein GI | 121596695 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGCGC CGAGCGTCGT TCGTTTTTCC GACGTCAGCC TGCGCTACGG CAAGACCGTC GCGCTCGAGC GGATCACGCT CGAGATCCCG GCCGGTCTCA CGATCGGGCT GATCGGGCCG GACGGCGTCG GCAAATCGAG CCTGCTCGCG CTCGCGGCCG GCGCGCGCGC GCTGCAGACG GGCGCGGTCG ACGCGCTCGG CGGCGACATG CGCTCGCGCC GCCATCGCGA GCGCGTGTGC CGGCGCATCG CGTACATGCC GCAGGGGCTC GGCAAGAACC TGTATCCGAC GCTCTCCGTC GAGGAAAACC TGCAGTTCTT CGCGCGCCTG TTCGGCCACG ACGCCGACGA GCGCCGCCGC CGGATCGACG CGCTCACGCG GAGCACCGGC CTCTTTGCGT TCCTGTCGCG GCCCGCGGGC AAGCTCTCGG GCGGGATGAA GCAGAAGCTC GGCCTATGCT GCGCGCTGAT CCACGATCCC GACCTGCTGA TCCTCGACGA GCCGACGACC GGCGTTGATC CGCTCGCGCG CGCGCAGTTC TGGGATCTGA TCGCGCGCAT TCGCTCGGAG CGGCCGGCGA TGAGCGTGAT CGTCGCGACC GCGTACATGG ACGAGGCGCA ACGCTTCGAC TGGCTGATCG CGATGGACGC GGGCCGCGTG CTCGCGACGG GCGCGCCCGC CGAGCTGCTC GCGCGCACCG GCTGCGATTC GCTCGAGGCG GCCTTCATCG CACTGTTGCC CGAAGACGAA CGGCGCGGCC ACAAGCCGGT GACGCTCGAG CCGCTGCGCG CCGACGCGCA AACCGGCACC GCGATCGAGG CGCGCGGGCT GACGATGCGC TTCGGCGATT TCACCGCGGT CGATCACGTG AGCTTCCGGA TCCGGCGCGG CGAGATCTTC GGCTTTCTCG GCTCGAACGG CTGCGGCAAG TCGACGACGA TGAAGATGCT CACCGGCCTG CTGCCCGCGA CCGAGGGCAC CGCGCAGCTG TTCGGCAAGA CAGTCGATCC GAAGGACATC AATACGCGCC GGCGCGTCGG CTACATGTCG CAGGCCTTCT CGCTGTATAG CGAACTGACG GTGCGGCAGA ACCTCGTGCT GCACGCGCGG CTGTTCGGCG TGCCGGCCGC CGAGATCGAC GCGCGCGTCG ACGAGATGGC GCGCCGCTTC GGCCTCGCCG ACATCTACGA CATGCTGCCG GACAGCCTGC CGCTCGGGAT GCGGCAGCGG CTGTCGCTCG CGGTGGCGAT GGTGCACAAG CCGGAGCTGC TGATCCTCGA CGAGCCGACC TCGGGCGTCG ATCCCGTCGC GCGCGACAGC TTCTGGCAGT TGATGATCGA CCTCGCGCGC CGCGATCGGG TGACGATCTT CATCTCGACG CACTTCATGA ACGAGGCGCA GCGCTGCGAC CGGATCTCGC TGATGCACGC GGGCCGCGTG CTCGCGAGCG ATGCGCCGGC GGCGCTCGTG CGCGCGCGCG GCGCGGCGAC GCTCGAGGAG GCCTTCATCG GCTATCTCGT CGACGCTTCG GCGCAGGAGG CGCAGGAGGC GCAGGGCGGC GCGGGCGAGC GCCCCGGCGC GGGCGAGCGC GCGGCGGGCG AAAGCGTGGC CGGTCGCGGC GCGGCGACCG ATGGCGATGC CGACGGCGCG CATGCGCGGC CCGCCGCGTA CGCGAACGGC GCGGCGCAAC ATCGCGCGCC CGATGCGGAC GCGGCCGGCA CCGACGTCGC CGCCGAGACG GGCGCACGCG ACGACGCGCG CACCGCACAC GCGGCCGGAC ATTCCGCCGG AAACGACGTA CGCGCCACGG TGGGCTCCGA AGTCGGCTCC GAAGTCGCCT CCGAAGCCGG CCTCGCAGCC AGCGCCGAAA GCGGCTCCGA ACGCGGCGTC GCCCACGGCG CCGAACGTGC ACGCGAACCC GCGGCGGATG CCGGCGCCGC AATCGACGTC GAACCGGGCG CGAGCGCGGA ATCGGCCACG GCCGCCGTCG CCCCGGCTCG CCACGCCGAA TCCGCCGCCA CGTCACCCCG CGCAGGGAAC GCGCCGGCCG GCACGCCGTT CGCCGCCGCG CCGGCCGAGC CGCCCCATCG CGCATTCAGC GCGCAGCGCG CGCTCAGCTA CATGTGGCGC GAGATGCTGG AGCTGCGCCG CGATCCCGTT CGCGCGACGC TCGCGCTGAT CGGCTCGCTC GTGCTGATGT GCGTGATCGG CATCGGCATC AGCCTCGACG TCGAGGATCT GACCTACGCG GTGCTCGACC GCGATCAAAC CGAGCTGAGC CACGACTACG CGCTGAACCT GTCCGGCTCG CGCTACTTCG TCGAGCGGCC GCCGATCGCC GATTACGCGG CGCTCGACCG CCGGATGCGC GACGGCGAGC TGTCGCTCGC GATCGAGATT CCGCCGAACT TCGCGCGCGA CGTCGAGCGC GGCGCGCCCG CGCAGATCGG CATGTGGATC GACGGCGCGA TGCCGCAGCG CGCCGAGACG ATCCGCGGCT ACGCGATCGG CATGCACACG ATGTGGCTCG CCGACAAGGC GCGGCACCGC CTCGGCGTGA CGCTCGCGCC GCGCGCGGAA GTGGTCACGC GCTACCGCTA CAACCCGGAC GTGAAGAGCC TGCCGGCGAT GATCCCCGCC GTGATGCCGC TGCTGCTGCT GATGTTGCCC GCGATGCTCA CCGCGCTCGC CGTCGTTCGC GAACGCGAGC TCGGCTCGAT CCTGAATCTG TACGTGACGC CCGTCACGCG CACCGAGTTC CTGATCGGCA AGCAGGTGCC GTACGTCGTG CTGGCGATGC TGAACTTCCT GCTGATGACG ATGCTCGCGC GCATCGCGTT CGACGTGCCC GTCAAGGGCA GCTTCATGAC GCTGCTGCTC GCGGTGCTGA TCTTCAACGT CGTCGCCACG GGCATCGGCC TGCTCGCGTC GACGTTCACG CGCAGCCAGG TGGCCGCGAT CGTGATGACG ATCATCGGCA CGATGATCCC GACCGTGCAG TTCGCGGGGC TGCTCACGCC GCTGTCGTCG CTCGAGGGCA CCGGGCGCTT GATCGGCCTC GTCTATCCGG CCACCTACAT GCTGTCGATC AGCCGCGGCG TGTTCAACAA GGCGCTGTCG CTCCACGAGC TCTACTCGCA GTTCTGGCCG CTCGCCGCCT GCGTACCGGT GATCCTCGGC GCGACCATAC TGCTCTTGAA AAAACAGGAA CGCTGA
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Protein sequence | MSAPSVVRFS DVSLRYGKTV ALERITLEIP AGLTIGLIGP DGVGKSSLLA LAAGARALQT GAVDALGGDM RSRRHRERVC RRIAYMPQGL GKNLYPTLSV EENLQFFARL FGHDADERRR RIDALTRSTG LFAFLSRPAG KLSGGMKQKL GLCCALIHDP DLLILDEPTT GVDPLARAQF WDLIARIRSE RPAMSVIVAT AYMDEAQRFD WLIAMDAGRV LATGAPAELL ARTGCDSLEA AFIALLPEDE RRGHKPVTLE PLRADAQTGT AIEARGLTMR FGDFTAVDHV SFRIRRGEIF GFLGSNGCGK STTMKMLTGL LPATEGTAQL FGKTVDPKDI NTRRRVGYMS QAFSLYSELT VRQNLVLHAR LFGVPAAEID ARVDEMARRF GLADIYDMLP DSLPLGMRQR LSLAVAMVHK PELLILDEPT SGVDPVARDS FWQLMIDLAR RDRVTIFIST HFMNEAQRCD RISLMHAGRV LASDAPAALV RARGAATLEE AFIGYLVDAS AQEAQEAQGG AGERPGAGER AAGESVAGRG AATDGDADGA HARPAAYANG AAQHRAPDAD AAGTDVAAET GARDDARTAH AAGHSAGNDV RATVGSEVGS EVASEAGLAA SAESGSERGV AHGAERAREP AADAGAAIDV EPGASAESAT AAVAPARHAE SAATSPRAGN APAGTPFAAA PAEPPHRAFS AQRALSYMWR EMLELRRDPV RATLALIGSL VLMCVIGIGI SLDVEDLTYA VLDRDQTELS HDYALNLSGS RYFVERPPIA DYAALDRRMR DGELSLAIEI PPNFARDVER GAPAQIGMWI DGAMPQRAET IRGYAIGMHT MWLADKARHR LGVTLAPRAE VVTRYRYNPD VKSLPAMIPA VMPLLLLMLP AMLTALAVVR ERELGSILNL YVTPVTRTEF LIGKQVPYVV LAMLNFLLMT MLARIAFDVP VKGSFMTLLL AVLIFNVVAT GIGLLASTFT RSQVAAIVMT IIGTMIPTVQ FAGLLTPLSS LEGTGRLIGL VYPATYMLSI SRGVFNKALS LHELYSQFWP LAACVPVILG ATILLLKKQE R
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