| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6004 |
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| Symbol | |
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| ID | 5154105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 6222874 |
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| End bp | 6224010 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640560726 |
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| Product | AcrB/AcrD/AcrF family mulitdrug efflux protein |
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| Protein accession | YP_001241848 |
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| Protein GI | 148257263 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00823963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTTCTCC TGGTTGCGAC GATTAGTGTC GTGGGTTGCA AGGAGCAGGA GGGGGCGTCG
GCAGCCAAGG CGGCGGATGC GCCGGCCGTC GGGTTCATCA CGGTCCAGGC GTCGCCGGTG
ACGCTCACGA AGATTCTGCC GGGGCGAATT ACGCCGATGA GGATCGCGGA GGTGCGGCCT
CGCATCAGTG GCATCGTGAC AGAGCGGGGC TTCCAGCAGG GCAGCGTCGT CGAGGCGGGG
ACGGTACTCT ATCGGATTGA TCCAGCCCCG TTCCAGGTCG AGCTGGATAA GGCCCGGGCC
GCACTGGCAA AGGCTGAAGC CGTGCTTTAT CAGGCCGAAC GACAGGAAGA TCGGCTCAAG
TCGCTATTGA CGAGCCAGTC GACGTCGCAG GCTCAATATG AGCTTGCGCT GGCAGCCGAG
CGCCAGGCGG AGGCTGAAGT GGCGGCACAG AAAGCCGTCG TGGAACAAGC TCAGCTCAAT
CTTGAATGGG CGACGGTCAG AGCCCCGATC AAGGGGCGTA TCGGACGTGC ATTGGTGACC
GAAGGGGCGC TTGTCAGTCC AACGGATGCG GCGCATCTGG CAACGGTTCA GCAGCTCGAT
CCGATCTATG CGGACTTCAC GCAGTCGGCC GGCGAGCTTG CTCAGCTCAA GCGCGACCTT
GCTAATGGCA GATTGAAAAA GGTGTCGTCC GAAGCCGCGC GCGTGCGGCT CGTTCTTGAT
GATGGATCGG TCTACAAGCA TAGCGGGCGC CTGTTGTTTT CCGACGTGAG CGTCGATCCC
AGCACGTCGA AGGTCAATTT GCGCGGGGAA TTCCCGAATC CGGACGCGGA TCTGCTGCCC
GGAATGTATG TGCGTGTTCA GATCGAGGAG GCGATCGACG CCGACGGCAT CGTCGTTCCG
TCGCAGGCGA TCCAGCGGAC TCCAGCCGGT GGGAGCGCGG TGTTCGTGAT CAACGATCAG
CAGAGGGCGA CACTTCAGCC GGTGCGGGTT GGCCGCTCTG TCGATGCCGG CGTCATGATC
GAGGACGGTC TGAAGCCTGG ATGGCGCATC GTGGTCGATG GCTTTCAGAA GTTCTCTCCA
GGTGAAATGG TGAAGCCGGT CGCCTGGCGG ATCGCCGCTC CGAACTCATC CAATTGA
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| Protein sequence | MLLLVATISV VGCKEQEGAS AAKAADAPAV GFITVQASPV TLTKILPGRI TPMRIAEVRP
RISGIVTERG FQQGSVVEAG TVLYRIDPAP FQVELDKARA ALAKAEAVLY QAERQEDRLK
SLLTSQSTSQ AQYELALAAE RQAEAEVAAQ KAVVEQAQLN LEWATVRAPI KGRIGRALVT
EGALVSPTDA AHLATVQQLD PIYADFTQSA GELAQLKRDL ANGRLKKVSS EAARVRLVLD
DGSVYKHSGR LLFSDVSVDP STSKVNLRGE FPNPDADLLP GMYVRVQIEE AIDADGIVVP
SQAIQRTPAG GSAVFVINDQ QRATLQPVRV GRSVDAGVMI EDGLKPGWRI VVDGFQKFSP
GEMVKPVAWR IAAPNSSN
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