| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0040 |
|---|
| Symbol | |
|---|
| ID | 5154460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 42402 |
|---|
| End bp | 42971 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640555070 |
|---|
| Product | putative nifU protein |
|---|
| Protein accession | YP_001236249 |
|---|
| Protein GI | 148251664 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0694] Thioredoxin-like proteins and domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.15873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.567558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATCC AGACCGAAGC CACCCCCAAT CCTGCCACCC TGAAGTTCAT CCCGGGCCGC
GTCGTGCTGC CCTCCGGAAC GATGGAATTT TCGAGCCGCG AGGCGGCTGC GCGTTCGCCC
TTGGCCGAGC GCCTGTTCGC CATTGGCGGC GTCACCGGCG TGTTCTACGG CGCCGACTTC
ATCACCGTGA CCAAGAACGA CGGCGAATGG CAGCATCTCA AGCCGGCCAT CCTTGGCGCG
ATCATGGAGC ACTATATGTC GGGCGCACCG CTGCTCGCCG ATGGCAGCGC CGCCAATGAC
GACGCCACCG ATGAGGACGA CGAGTTCTAT GACGAGGCGG ACACCGAGAC GGTCGGGATG
ATCAAGGATT TGATCGAAAG CCGCGTCCGC CCGGCGGTCG CCAATGATGG CGGCGACATC
ACCTTCCGCG GCTTCAAGGA CGGCATCGTC TACCTCAACA TGAAGGGCGC CTGCTCGGGC
TGCCCGTCAT CGACCGCGAC GCTGCAGCAT GGCATCCAGA ATCTGCTGAA GCACTTCGTA
CCCGAGGTGG TCGAAGTCCG CCCGATGTGA
|
|---|
| Protein sequence | MFIQTEATPN PATLKFIPGR VVLPSGTMEF SSREAAARSP LAERLFAIGG VTGVFYGADF
ITVTKNDGEW QHLKPAILGA IMEHYMSGAP LLADGSAAND DATDEDDEFY DEADTETVGM
IKDLIESRVR PAVANDGGDI TFRGFKDGIV YLNMKGACSG CPSSTATLQH GIQNLLKHFV
PEVVEVRPM
|
|---|
| |