| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6070 |
|---|
| Symbol | kdpE |
|---|
| ID | 7380891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 1088423 |
|---|
| End bp | 1089109 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649568 |
|---|
| Product | two component response regulator |
|---|
| Protein accession | YP_002547793 |
|---|
| Protein GI | 222107002 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGC AACGCATTCT CGTCGTCGAT GATGAGCCAC AGATCCTCCG GTTCCTGCGC
CCTGCCCTTG CGGCGGCCGG TTACGAGGTG ATTGAAGCCG ATACGGGCAA GCAGGCATTG
GCGCTGGTGG CAACCGCCGT GCCGGACCTA CTGATCCTCG ATCTCGGCCT GCCTGATATG
GACGGCAAAG AGGTGATCGC CCAATTGCGC CACTGGAACC CGATCCCGAT CATCGTGCTA
TCCGCACGGG ACCGTGAGGT CGAAAAGATC GCCGCCCTTG ATCTCGGTGC CGACGATTAT
CTCGAAAAAC CGTTCGGAAT CGGCGAATTG ACGGCCCGCA TTCGCGTCGC CCTTCGCCAT
AAACCGCAAG CGGAACCGGC CCCATCCATC ATCCGCAGTG GTGAACTCGT CATCGACATC
GACCACCGCC TCGTCACAAG AGCGGATCAG CCGGTCAAGT TGACGCCGAA GGAATATGAT
CTGCTGCGCC TGCTCGCCAC CCATGCGGGT CGCGTCTTGA CCCATGGCGC CTTGCTGAAA
GAGGTATGGG GGCCGGCCCA TGCCCACGAC CTTCAATATC TGCGCGTCTT TATTCGCCAG
ATCCGCGCCA AGATTGAAAA AGACGAAAGC CAACCGGCAA TCATCCTCAC CGAAGCCGGG
GTGGGGTATC GCTTTGTGCT GGCGTAA
|
|---|
| Protein sequence | MKGQRILVVD DEPQILRFLR PALAAAGYEV IEADTGKQAL ALVATAVPDL LILDLGLPDM
DGKEVIAQLR HWNPIPIIVL SARDREVEKI AALDLGADDY LEKPFGIGEL TARIRVALRH
KPQAEPAPSI IRSGELVIDI DHRLVTRADQ PVKLTPKEYD LLRLLATHAG RVLTHGALLK
EVWGPAHAHD LQYLRVFIRQ IRAKIEKDES QPAIILTEAG VGYRFVLA
|
|---|
| |