Gene Avi_5042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5042 
Symbol 
ID7381202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp33645 
End bp35141 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content59% 
IMG OID643648716 
ProductABC transporter nucleotide binding/ATPase protein (sugar) 
Protein accessionYP_002546953 
Protein GI222106162 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.650295 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCGACG AAAAACTACT GGAATTTTGT GCGATCACAA AAACCTTCGG CGGAACGCGC 
GCCCTGTCAA ATGTCTCGCT CGACCTGCGA CCCGGTGAAA TCCTGGCACT GCTTGGCGAA
AACGGCGCTG GAAAATCAAC CCTGATCAAG ACCCTCGCAG GTATTTACAA GCCAGACACC
GGTGAAATCA GATTTCGTGG ACAGACCTAT AATCACCGGC CACCAAAGCC AAACCAGCGC
CAGCCCGTTG CCTTCATTCA TCAAGATCTC GGCCTGATCG AATGGATGAC CGTTGCCGAA
AATGTCGGCC TTGCCCAAGG CTACTCACTA CGCAACCGCC TTATCAATTG GAAACAAACC
GAACAGCGGA CCGCCGAAGC CCTTGCTCTC GTCGGCTGCA ACTTCGATCC CTCCACACGT
ATCCAGAGCC TGACACGGAC AGAAAAATCA CTTGTCGCAA TTGCCCGCGC ACTGGCAGTC
GAAGCAGACG TGCTGGTGCT GGATGAGCCG ACGGCCAGCT TACCGGCTGA TGAAGTCGAA
AAACTCTTTG CAGCAATCCG CCCATTGAAG GAACGCGGCG TAGCGATGAT TTATGTCTCG
CACCGCCTGG ATGAAATCTT CCGTATCGCC GATCGCGTCG CCGTCCTTCG AGACGGACAA
TTGGTTGGCG AAAAGCCCGT AACCCAGACG ACACCTGACG AACTGATTAG GATGATCGTC
GGGCGCAAGG CCGACCAGCT CTTCACCAAG AGCACAAGTC CGGCGGGACC GGCCATCGTC
ACCGTCAGAG ATCTTGGCTG CCGCGGGGCA GGGCCGGTCT CTTTCGACAT CCGGCAAGGT
GAATTGCTCG GACTGGTCGG ACTGCGCGGC GCAGGCCACG AATTGGTCGG TCGCGCACTG
TTCGGCGCAG AACCCGCCTC TGGCACCGTT ACGATTTCCG GTCGCCCTGT CGATCTCACC
AACCCCTCAA CAGCCATGGC CAGTGGGGTC GGATTGATTG CCCGCGACAG AACAGAAGAG
TCGGTCGCCA TGTCCCTGAG CCTGCGAGAA AACACCTTCA TTAATCCTGC CGCCTCAGGC
CGCCGTCTCC TTTCCTTTCT GACCCCTGCC AAGGAAGCCG CGCAAGCCTA CGCGATTGGC
GCGCGCGTCG GCTTGCGGCC AAACGACCAG AGCCTTGCCA TAGAAGCGCT TTCCGGCGGC
AACCAACAAA AAGTTGTGGT GGGTCGCTGG CTGGCGACAG GCCGGCGCCT ATTGGTGGCG
GAAGATCCGA CTGCCGGTGT CGATGTTGGT GCCAAGGCCG ATATCTATCG CCTGATCGCC
GAGGCCGTCG AAGGCGGATT GGCGGTCCTA GTGGTTTCAA CCGATTTTGA AGAAATCGCC
CATATCTGCC AGCGGGCGCT GGTATTTTCT CGCGGCCAAA TTTTGAGAGA GCTGAGCGGG
CCAGAGTTGA CAACAGAAGC GGTGATCGCC GCAGCCTCCG CCTCGGACGC GGCCTGA
 
Protein sequence
MVDEKLLEFC AITKTFGGTR ALSNVSLDLR PGEILALLGE NGAGKSTLIK TLAGIYKPDT 
GEIRFRGQTY NHRPPKPNQR QPVAFIHQDL GLIEWMTVAE NVGLAQGYSL RNRLINWKQT
EQRTAEALAL VGCNFDPSTR IQSLTRTEKS LVAIARALAV EADVLVLDEP TASLPADEVE
KLFAAIRPLK ERGVAMIYVS HRLDEIFRIA DRVAVLRDGQ LVGEKPVTQT TPDELIRMIV
GRKADQLFTK STSPAGPAIV TVRDLGCRGA GPVSFDIRQG ELLGLVGLRG AGHELVGRAL
FGAEPASGTV TISGRPVDLT NPSTAMASGV GLIARDRTEE SVAMSLSLRE NTFINPAASG
RRLLSFLTPA KEAAQAYAIG ARVGLRPNDQ SLAIEALSGG NQQKVVVGRW LATGRRLLVA
EDPTAGVDVG AKADIYRLIA EAVEGGLAVL VVSTDFEEIA HICQRALVFS RGQILRELSG
PELTTEAVIA AASASDAA