| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1433 |
|---|
| Symbol | |
|---|
| ID | 3682573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1772917 |
|---|
| End bp | 1774143 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637716771 |
|---|
| Product | cyclic nucleotide-binding domain-containing protein |
|---|
| Protein accession | YP_321951 |
|---|
| Protein GI | 75907655 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02982] ABC exporter ATP-binding subunit, DevA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.532362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGG TTATTAAAAT TAAAGAACTT AACCATTATT ATCAAGAAGG CAGAAGAAAA
AAACAAATTC TATTTGGCAT TAATCTTGAA ATTCAATCCC AAGAAGTTGT GATTTTAACT
GGAGCGTCTG GTTCAGGGAA AACGACACTT CTATCTTTGA TGGGCTGTCT ACGTTCTGTG
CAAGAGGGTA GTCTTAAATT GTTTGCTCAT GAATTAAAGG GAGCTAACGA ATTCGAGCGG
ACGCAAATAC GCAGACGAAT TGGTTATGTT TTTCAACATT TCAACTTATT AGATTTTATG
ACTGTTCGTC AGAATGTCAT TCTGTCTCTA GAACTACAGG ATAATTTTAC ACCTCAAGAT
GCTATTAGCA AAAGTACAGA AATTCTCAAA TTAGTTGGTA TGGAAAAGCA CATAAACGCT
TATCCAAGGG ATCTCTCCGG TGGGCAAAAA CAACGGGTAG CGATCGCCCG CGCCCTTGTC
CATCGTCCGC AATTAATTTT TGCAGATGAG CCAACATCTT CTTTAGATGG ACAAACAGGA
AAAGAAGTCG TTGAACTGAT GACAGGACTG GCGAGGGAAC AAGGGAGTGC TGTTGTGATT
GTCACCCATG ATAACCGTAT TTTTGGCGTG ACCAATCGGA TTCTGCGTAT GGAAGATGGC
AAACTAGATT TAGACTATCA GGGCCGGCTA TCTGTTGCTT TACCGACCTT AACTGATAAG
CAATTAATCC AGTTACTTCC TCAATTAAAA ATGCTGACTT TCCAACCTGG TGAAATTGTC
ATCCACCAAG GTGACTTAGC CGATAAATTC TATATCTTGA TGGAAGGAGA GGTAGAGGTA
ATTCAAGAAG ATGGGGACTC AGAACCAAAA TTATTAAAAA GATTAGGGCC TAATAGCTAT
TTTGGTGAAA TAGGGTTACT TCACGAAACT ACGCGGACAG CAACAGTAAG GGCGGCAAGT
GACACTCCTA TAAAAGTTAT AGTTTTTGAA CAATCAGATT TTGAGAAGAT GGTCAACAGT
TCCGAAATGA CCTATGCAGT TTTGAATTAC CAAGCAATGA AAGCTGGACG AACGCAAATC
CAAACTCCTA ATAGTGCATC TATACAACTT CGCCAGAAAG AATTAAAAAT CCTTGAGGAA
TACTGTAGGG AAGCCTCAAG GACTGAAATT GATGTGTTGA ATGAGTTAAT TAACGAGCTA
TCACAGCAAA CTAGGCATAG TAAGTAA
|
|---|
| Protein sequence | MNQVIKIKEL NHYYQEGRRK KQILFGINLE IQSQEVVILT GASGSGKTTL LSLMGCLRSV
QEGSLKLFAH ELKGANEFER TQIRRRIGYV FQHFNLLDFM TVRQNVILSL ELQDNFTPQD
AISKSTEILK LVGMEKHINA YPRDLSGGQK QRVAIARALV HRPQLIFADE PTSSLDGQTG
KEVVELMTGL AREQGSAVVI VTHDNRIFGV TNRILRMEDG KLDLDYQGRL SVALPTLTDK
QLIQLLPQLK MLTFQPGEIV IHQGDLADKF YILMEGEVEV IQEDGDSEPK LLKRLGPNSY
FGEIGLLHET TRTATVRAAS DTPIKVIVFE QSDFEKMVNS SEMTYAVLNY QAMKAGRTQI
QTPNSASIQL RQKELKILEE YCREASRTEI DVLNELINEL SQQTRHSK
|
|---|
| |