| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0290 |
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| Symbol | |
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| ID | 8413138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 334856 |
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| End bp | 336751 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645021857 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_003179312 |
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| Protein GI | 257784095 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000372175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.539461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAA AGACAAAGGT GAAGATTGTT CGCATTGTCT GTTCTGCTGT TTTGTTAGGT
GTTGCTTACG TGGTTGAACA TGTATTTAAC CTGCAGCTAT GGCAGGCGCT TTTGCTCTAT
CTGTTGCCTT ATGCCGTTGC AGGATATGAT GTTGTTCTGG AGGCATGGGA GAGCATCACT
GAGGGCGAGT GCTTTAACGA GGACTTGCTT ATGACCATTG CTACCCTTGG TGCTTTGTTT
ATTGGTTTTG TGCCTAATGG ATCTCCTATG TTTGACGAGG CTGTCTTTGT CATGCTGTTC
TTCCAGGTAG GAGAGGTATT TGAGCACCTC GCTTCCGATA ACAGCAAGAA GTCTATTGCT
AAGCTTATGG ATATCCGTCC CGATAGCGCA ACGGTTGAGC GCGACGGACA GCTGCTCACT
GTCTTACCAG AAGAGGTTGA GCTAGGAGAG ATTATCGTAG TAAAACCAGG TGATCGTGTT
CCTGTTGATG CAGAGATTGT CGAGGGTTCT ACCAGTCTTG ATACTGTTGC TCTTACCGGT
GAGAGCGTTC CTCGTGACGC GACAGTGGGA GATAATATTA TCTCGGGTTG TGTCAATCTT
TCTGGCGTGG TGCGCGCTCG TGTTACCCAC CTCTTTGAAA ACTCTACAGC TACTCGCATT
ATTAAGCTTG TAGAGAGTTC AAATCAAAAC AAGTCTAAGA GCGAGAGCTT TATTCGTCGT
TTTTCTCGCG TCTATACCCC AGCTGTTGTT TACAGTGCTA TTGCGCTTGC GTTTTTGCCT
CCTCTGTTCT CGGGTGATTT TGTAGGCAAT GCTTCTACCT GGATTGTAAG AGCGCTTACC
TTCCTTATTG CGTCGTGTCC TTGTGCGCTG GTAGTTTCTG TACCACTAAC CTTCTTTGGC
GGCATTGGCG CTGCTTCAAA GGAGGGTATT TTGATCAAGG GTTCTGCATA CATTGATACG
CTGTCTACTC TTGATACTGT TGCATTTGAT AAGACCGGTA CGCTGACTGA GGGTGTCTTT
GAGGTTCTCG CTGTTCACCC TCAAACTATT GGCGAGAAGG ACCTTCTACA CCTAGCTTCT
CATGTTGAGA TGCACTCTAC ACATCCAATT GCGGCAGCTC TTCGCGCTGC CTATCCTAGT
GAGGATGATG GTTGTGTTAT TACGGATATC AAGGAAATTG CAGGTCAAGG TATCTGTGCT
AACGTAAATG GTAAGAGTGT TGCTGTTGGC AATTGTGCAC TCATGGAGAG CGTTGGAGCT
TCTTGGAAGG CATGCAAGAA TCATGGAACC ATCATTCACG TAGCTGTTGA TGGAACCTAC
ATGGGTCATA TTGTTATTTC TGACCGTGAA CGAGCTGACG CTCCAGCAGC AATCGTTTCT
CTTAAAAATG TTGGCGTTTC CAAGGTTGTC ATGCTCACGG GCGATAAACG CGATGTTGCA
GAAGAAATTG CAGCTCAGAT GAGTATTACC GAGGTCCGCG CAGAGCTGCT CCCACAGGAT
AAGGTATCTG CAGTCGAAGG TCTTCTCGCC CAGAAGGCGG CTGGTAAGTC ACTTGCTTTT
GTAGGTGACG GCATCAACGA TGCTCCTGTT CTTGCTCGTG CAGATGTTGG TGTTGCTATG
GGCGTTTTAG GATCTGATGC TGCTATCGAA GCTGCTGACG TAGTGCTTAT GGATGACAAG
CTCTCCAAGC TCTCAAAGGC TGTAAAGATT GCTCGTTATA CCTTGGGCAT TGCGAAGCAG
AACATTGTGT TTGCTATTGG CATCAAGGTT GCTATTTTGA TTCTTGCAGC CTTTGGTTTG
GCGCCTATGT GGCTGGCTGT CTTTGGAGAC ACGGGCGTTA TGGTGCTTGC AGTTCTTAAT
TCCACTAGGG CTTTAAATAT TAAGTCAATT AAGTAA
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| Protein sequence | MSPKTKVKIV RIVCSAVLLG VAYVVEHVFN LQLWQALLLY LLPYAVAGYD VVLEAWESIT
EGECFNEDLL MTIATLGALF IGFVPNGSPM FDEAVFVMLF FQVGEVFEHL ASDNSKKSIA
KLMDIRPDSA TVERDGQLLT VLPEEVELGE IIVVKPGDRV PVDAEIVEGS TSLDTVALTG
ESVPRDATVG DNIISGCVNL SGVVRARVTH LFENSTATRI IKLVESSNQN KSKSESFIRR
FSRVYTPAVV YSAIALAFLP PLFSGDFVGN ASTWIVRALT FLIASCPCAL VVSVPLTFFG
GIGAASKEGI LIKGSAYIDT LSTLDTVAFD KTGTLTEGVF EVLAVHPQTI GEKDLLHLAS
HVEMHSTHPI AAALRAAYPS EDDGCVITDI KEIAGQGICA NVNGKSVAVG NCALMESVGA
SWKACKNHGT IIHVAVDGTY MGHIVISDRE RADAPAAIVS LKNVGVSKVV MLTGDKRDVA
EEIAAQMSIT EVRAELLPQD KVSAVEGLLA QKAAGKSLAF VGDGINDAPV LARADVGVAM
GVLGSDAAIE AADVVLMDDK LSKLSKAVKI ARYTLGIAKQ NIVFAIGIKV AILILAAFGL
APMWLAVFGD TGVMVLAVLN STRALNIKSI K
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