| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0283 |
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| Symbol | |
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| ID | 8413131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 324104 |
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| End bp | 324856 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645021850 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003179305 |
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| Protein GI | 257784088 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000106623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCG ATTTTACAGG CAAATTGGTT CTGGTTACAG GCGGAAGCGC TGGCATTGGC
GCTGAAATCT CCAAGGGTAT TGTTGCTGGA GGTGGACATG TAATCGTTTG CTCTCGCCAT
GAGGACACTG GCCGTAAGTT TGTTGAAGAA CTTGGCGAGG GTAACTATTT CTACCCAATG
GACATTTCAG ATGCAGAGGG TGTTAAGAAG ACTGTTGCTC AGATTCTTGA GGAGCGCGGA
GACGTTAACG TTCTTATCAA CTGTGCTGGT CGCATCAGCT CCGTTCCTTT TGCTGAGGTA
GATGACGAGG AGTGGAATAA GACCATCAAC ACCAATCTCA CTGGTACTTA CAACGTGACT
CACGCTCTCT GGCAGCACTT CATTAAGCGT GGCGGCGCAC GTATCGTCAA TGTTTCTTCC
GTTGCCGGCA AAATTGGTGG CGGCCTCCTT GGTACCGTTG CGTACGCATC TTCCAAGGCT
GGCATGAATG GCTTTACCAA GGCTATTGCT AAAGAGGGTG GCAAGTACGG CATTTCTTGT
AATGCTGTTT GCCCATCTTT TACCATTACA GATATGACCA CTGCACTTTC CAATGATGAG
GAGAAGTACA AGAAGGTTGT AGGTATTATT CCTCTTGGTC GTCCTGCTCA GGCATCTGAG
CCTGCACAGA TGGTACTGTT CTTTGCTTCT GATGCTGCTA GCTTTGTCAA CGGTGAGGTT
GGCGACTGCG ACGGCGGCAT TGTTATGGAC TAG
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| Protein sequence | MTFDFTGKLV LVTGGSAGIG AEISKGIVAG GGHVIVCSRH EDTGRKFVEE LGEGNYFYPM
DISDAEGVKK TVAQILEERG DVNVLINCAG RISSVPFAEV DDEEWNKTIN TNLTGTYNVT
HALWQHFIKR GGARIVNVSS VAGKIGGGLL GTVAYASSKA GMNGFTKAIA KEGGKYGISC
NAVCPSFTIT DMTTALSNDE EKYKKVVGII PLGRPAQASE PAQMVLFFAS DAASFVNGEV
GDCDGGIVMD
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