| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2088 |
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| Symbol | |
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| ID | 4671659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2206129 |
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| End bp | 2209272 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639839166 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_986340 |
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| Protein GI | 121594444 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.603793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.591711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACAT CCCACGCACA GCGCTCGTTC CCCTGGCACT GGCTCCCCGG AGCGGCCGTG
GCGCTGGCCG GTTGCGCGGC AAGCTACGCG CTGTACCACC AGCAGCAATC CTCCATGCAG
GCCATCGCGC GGGTGCGTTT CGAGCAGGAG GCCCGGCTGT TTGCCGAGAC GCTGCAGCGG
CGCATGGAGT CCCACGCGGA TTTGCTGCAG GGCATGCGCG GCCTGCTGAC GGTGAATCCG
CAGCTGCGGC GCGCCGACTT CGAGCGCGTG GCGCGTGAGC TGGATCTGCG GCATTACCAC
CCCGGCGTGA AGAACATCAA CTTCACGCGG TACGTGCCCG GCCCCCGGCG GGCGGCCTTC
GAAGAGCAGG CGCGCTCCGA CCCGCATCTG GACGGCGACC TGCCGCGGGA TTTCGCCATC
CATCCGCAGG CCGTATTGCC GGACTATTTC GTGGTGGACT ACCTCTGGCC GCAGGGGGGC
AACAGCGGCG TGCAAGGGTT GGAGATCCAT TCCCAGCCAG CCAACCTCGA AGCCATGCGC
CGTGCGCGCG ACACCGGCGG GCTGGTCGCC TCCGCGCCGT TCGAGCTGCA CCAGGAAACC
GAGCACCGCA CGGGCGTCAT CATCCGCATG CCGGTGTTTG CCGAGCCGGC GGCCGGACAG
GCGGGGCCGG CGCGCTTTCT GGGGGCGGTG GGCGTGAGCC TGCGCATCTA CGACATCGTG
CATGCCGTGC GCACCGCGGG CAACATGCAG GGCCTGGCGC TGCGCATGGC GGACGTGGGC
CCCTTCAACA GCGAGGAGCC TGCTCCGCCG CAATCCCTCT TTGAATCGGA GACGCGCGTC
GGCACCTCTG CCATGGAATA TGAGCAAAGC GTGCGCGTGG GCGGAAGGCG CTGGAGCCTG
CAGTTCCAGC CCGTCGTGCC GTTCCTCTCG CCGCAGGAGT CGCGCCTGCC CTGGCTGCTG
GGCTCCGGCG GCCTGTTGGT GACCGCACTG CTCACCGCGC TGGTATCGAT GCTGGTGCTG
CGGCGGTCAC AGGCACTGGA CCATGCCAAG GAGACCGATA CGGCCTTGCG CGAAAGCGAG
GCGCGCCTGC GCGCCGTGTT CAACCAGGCC GCGGTGGGCA TCGCCCAGAC CGACTCGCGC
ACCGGCCGCC TGGTGCGCAT GAACCAGAAG TTCTGCGACC TGTTGGGCTA CAGCGCGCAG
GAACTGCAGC AGATGCGCTT TCAGGACTTC AGCGAGCCCA GCGACCTGGC CGCGGACCTG
GAGCAACTGC AGCGGATGCT GGCCGGTGAG CTGAGCGAAT ACCGCATGGA AAAGCGCTAC
CGCCGCAAGG ACGGCAGCGA GGTGTGGGTG GACCTCATGG TCTCGCCGCT GCGCCTGGAA
GGCCAGCCCG AACACCACCT TGCGGTGGTG CAGGACATCA GCAAGCGCAA GCACATGGAG
CAGGTGCTGC GCCAGAGCGA GGAGCCCCTG CGCAACATCC TGAACCACAT GCCCGTGGGC
GTGAACCAGG TGCAGGACGG CAAGATCGTG TTCCGCAACG ACCGGCATGT CCAGATCTGC
GGCTACGACA TACGCGAGGC GCCCGACGTG GACACCTGGT GGCGCCTGGT AATGCCCGAC
GCACACCAAC GCGAGCATGC GCGCGAGGCA TGGCACGCCG CATGCACGGC GGCGCTGAAG
AACCCCGACG GTGCCATCCG TACCGTGGAA TGCGTGATCA CCGCCAAGTC GGGCGTGCGC
CGCGCGGTCG AGCTGTCCGG CATGATCCTG GGTGACTCGC ACATCGTCAC CATGGTGGAC
CAGAGCCAGC GCAAGGCGGC CGAGGAAGAG GTGCGCTACC TGGCCTACAA CGATCCGCTC
ACCGGCCTGC CCAACCGCCG CCTGCTGCTG GACCGCCTGG AGCAGGCGCT GGCCATGAGC
GCCCGCCACC AACTGTGCGG CGCGGTGATG ATGCTGGACC TGGACAACTT CAAGACCATC
AACGAGACGC AAGGCCCCGA CATGGGTGAC CGCCTGCTGC GCGAGGTGGC CCGGCGGCTG
CGCGACTGCG TGCCCGAGGA CGAAACCCTG GCGCGCCACG GCGGCGACGA GTTCGTCGTG
GTGCTCAAGG ACCTGGGCGC CGACCCGCAG GAGGCAGCCA ACCGCGCCGA GGAGATGGGC
CAGACGATCC TGGCGGCCAT TCGCGCGCCC TTCGACATCG ACGGTCAGCA GCACCACACG
GCGCTCAGCG TGGGCATCGC CATCTTCCGC GGGGTGCGCG AATCGGCGGA CGAGCTGCTC
AAGCGCAGCG ACCTTGCCAT GTACGAGGCC AAGGCCGCCG GGCGCGATAC GCTGCGCTTT
TTCGATCCAC AGATGCAGGC TGCCGTGTCC GAACGCGCGG CGCTGGAGGC GGACCTGCGC
GCCGGACTGG ATGCGGGACA GTTAGAACTG TTCTACCAGC CCAAGGTGGA CCAGGGCCGC
ATCACGGGCG CCGAGGCGCT GGTACGCTGG CGCCATCCGG ACAGGGGCTT CATCTCGCCA
GCGGAATTCA TTCCCTTGGC GGAAGAAAGC GGACTGATCC TGCGCGTGGG CGAGTGGGTG
ATGCGCAGCG CCTGCGCACA GCTGGCGCAG TGGAGCGCGC ACCCCGTGCT GGGTGAGCTC
ACCGTCGCGG TGAACGTGAG CCCGCGCCAG TTCCACGAGG GTAGCTTCGT GCCCCAGGTG
CTGGAGGCGC TGGCCGCCTC GGGCGCCGAC GCGCGCCGCC TGCGGCTGGA ACTGACCGAG
GGCATGCTGC TGCAGGACGT GGAGGACACC ATCGCCAAGA TGGTGCAGTT GCGTGGCTAC
GGCGTGGGCT TCTCGCTGGA CGACTTTGGC ACGGGCTACT CGTCGCTGGC CTACCTCAAG
CGCCTGCCCC TGCACGAGCT GAAGATCGAC AAGAGCTTCG TGCGCGACGT GCTCACCGAC
CCCAACGATG CCGTGATCGC ACGCACGATC GTCGCCCTGG GCACCAGCCT GGGCCTGCGG
GTGGTGGCCG AGGGCGTTGA GACCGAGGCG CAGCGCGCCT TTCTGGAGCG CAACGGCTGC
CACGCCTGGC AGGGCTATCT GCTCAGCCCA CCGCTGCAGG CCGCGGCGTT CGAGGCCTTG
GTGCTGAAGC GGGCCGGCGT CTGA
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| Protein sequence | MPTSHAQRSF PWHWLPGAAV ALAGCAASYA LYHQQQSSMQ AIARVRFEQE ARLFAETLQR
RMESHADLLQ GMRGLLTVNP QLRRADFERV ARELDLRHYH PGVKNINFTR YVPGPRRAAF
EEQARSDPHL DGDLPRDFAI HPQAVLPDYF VVDYLWPQGG NSGVQGLEIH SQPANLEAMR
RARDTGGLVA SAPFELHQET EHRTGVIIRM PVFAEPAAGQ AGPARFLGAV GVSLRIYDIV
HAVRTAGNMQ GLALRMADVG PFNSEEPAPP QSLFESETRV GTSAMEYEQS VRVGGRRWSL
QFQPVVPFLS PQESRLPWLL GSGGLLVTAL LTALVSMLVL RRSQALDHAK ETDTALRESE
ARLRAVFNQA AVGIAQTDSR TGRLVRMNQK FCDLLGYSAQ ELQQMRFQDF SEPSDLAADL
EQLQRMLAGE LSEYRMEKRY RRKDGSEVWV DLMVSPLRLE GQPEHHLAVV QDISKRKHME
QVLRQSEEPL RNILNHMPVG VNQVQDGKIV FRNDRHVQIC GYDIREAPDV DTWWRLVMPD
AHQREHAREA WHAACTAALK NPDGAIRTVE CVITAKSGVR RAVELSGMIL GDSHIVTMVD
QSQRKAAEEE VRYLAYNDPL TGLPNRRLLL DRLEQALAMS ARHQLCGAVM MLDLDNFKTI
NETQGPDMGD RLLREVARRL RDCVPEDETL ARHGGDEFVV VLKDLGADPQ EAANRAEEMG
QTILAAIRAP FDIDGQQHHT ALSVGIAIFR GVRESADELL KRSDLAMYEA KAAGRDTLRF
FDPQMQAAVS ERAALEADLR AGLDAGQLEL FYQPKVDQGR ITGAEALVRW RHPDRGFISP
AEFIPLAEES GLILRVGEWV MRSACAQLAQ WSAHPVLGEL TVAVNVSPRQ FHEGSFVPQV
LEALAASGAD ARRLRLELTE GMLLQDVEDT IAKMVQLRGY GVGFSLDDFG TGYSSLAYLK
RLPLHELKID KSFVRDVLTD PNDAVIARTI VALGTSLGLR VVAEGVETEA QRAFLERNGC
HAWQGYLLSP PLQAAAFEAL VLKRAGV
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