Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aasi_0014 |
Symbol | |
ID | 6377705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Amoebophilus asiaticus 5a2 |
Kingdom | Bacteria |
Replicon accession | NC_010830 |
Strand | + |
Start bp | 18265 |
End bp | 19128 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 642681214 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001957200 |
Protein GI | 189501483 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACAGC TCAAAATAAG CAAGCAGATT ACCAACCGCG AAAGCCAATC TTTAGATAAA TATCTACAAG AGATTGGACG AGTAGACCTG CTTACACCAG AAGAGGAAGT GGAACTTGCA AAACGTATTA AGTCAGGCGA TAAAATTGCA TTGGAACAGC TTACTAAAGC TAACTTACGT TTCGTAGTGT CTGTGGCTAA ACAATACCAG AACCAAGGCC TATCGTTGAG TGATCTTATT AATGAGGGGA ACTTAGGACT TATTAAATCG GCTCAGCGTT TTGACGAAAC ACGAGGATTT AAGTTTATTT CCTATGCCGT ATGGTGGATT AGACAGTCTA TCTTGCAAGC TTTAGCTGAG CAGTCGCGTA TTGTACGTTT ACCACTCAAC AGAGTAGGTA CCCTTAACAA ATTATCTAGG ACTTTCTCGC AGCTTGAACA AAAATATAAA CGCGAACCAA CTGCTGAAGA GCTGGCAGAA GAACTAGAGG TTACGCCCGG CGAAATAAGT GATACCATGA AAATATCTGG TCGTCACGTA TCAATGGATG CTCCTTTTGT ACAAGGTGAA GAGCATAGCT TACTAGACGT ATTAGAAGAT GATGATGAAG ATAAACCTGA TGATACGCTT ATTGATGAAT CTTTGTGCAA AGATATAGAA CGTGCTTTAT CCTTGCTTAC AGAAAGAGAA GCTGGTGTTA TAAGCTATTA CTTTGGTTTA AAAGGTACAA ACCCAATGAC CCTAGAAGAA ATAGGTACTC GGTTTAACCT AACTCGTGAG CGTGTGCGCC AGATTAAGGA AAAGGCAATC AAAAAATTAC GCCATGTAGC AAGCAGCAAA ACTTTAAAAA ACTATCTAGG TTAA
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Protein sequence | MRQLKISKQI TNRESQSLDK YLQEIGRVDL LTPEEEVELA KRIKSGDKIA LEQLTKANLR FVVSVAKQYQ NQGLSLSDLI NEGNLGLIKS AQRFDETRGF KFISYAVWWI RQSILQALAE QSRIVRLPLN RVGTLNKLSR TFSQLEQKYK REPTAEELAE ELEVTPGEIS DTMKISGRHV SMDAPFVQGE EHSLLDVLED DDEDKPDDTL IDESLCKDIE RALSLLTERE AGVISYYFGL KGTNPMTLEE IGTRFNLTRE RVRQIKEKAI KKLRHVASSK TLKNYLG
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