128 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dole_0027  CDS  NC_009943  28802  29572  771  hypothetical protein  YP_001527914  decreased coverage  1.16236e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0043  CDS  NC_009943  51701  54091  2391  LVIVD repeat-containing protein  YP_001527930  decreased coverage  1.00601e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0064  CDS  NC_009943  72123  72590  468  hypothetical protein  YP_001527951  decreased coverage  0.00196397  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0135  CDS  NC_009943  148111  150051  1941  1A family penicillin-binding protein  YP_001528022  decreased coverage  1.46416e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0136  CDS  NC_009943  150159  150455  297  hypothetical protein  YP_001528023  decreased coverage  5.82545e-10  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0160  CDS  NC_009943  175844  176248  405  UspA domain-containing protein  YP_001528047  decreased coverage  4.38875e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0161  CDS  NC_009943  176276  177982  1707  TrkA domain-containing protein  YP_001528048  decreased coverage  0.000200021  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0309  CDS  NC_009943  353467  354090  624  RnfA-Nqr electron transport subunit  YP_001528196  decreased coverage  0.00114498  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0329  CDS  NC_009943  376692  379655  2964  type IV pilus secretin PilQ  YP_001528216  decreased coverage  0.00519282  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0344  CDS  NC_009943  393936  396110  2175  ferrous iron transport protein B  YP_001528231  decreased coverage  0.00337716  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0363  CDS  NC_009943  417621  420425  2805  parallel beta-helix repeat-containing protein  YP_001528250  decreased coverage  0.000494695  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0369  CDS  NC_009943  426552  427478  927  DNA binding domain-containing protein  YP_001528256  decreased coverage  4.03691e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0370  CDS  NC_009943  427693  428667  975  phosphoesterase domain-containing protein  YP_001528257  decreased coverage  1.55392e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0425  CDS  NC_009943  490042  490413  372  zinc-resistance associated protein  YP_001528312  decreased coverage  0.000113205  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0440  CDS  NC_009943  508158  510020  1863  thiamine pyrophosphate binding domain-containing protein  YP_001528327  decreased coverage  9.68749e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0449  CDS  NC_009943  517312  517833  522  hypothetical protein  YP_001528336  decreased coverage  1.34264e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0564  CDS  NC_009943  632711  633049  339  nitrogen regulatory protein P-II  YP_001528451  decreased coverage  7.17962e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0565  CDS  NC_009943  633089  634375  1287  ammonium transporter  YP_001528452  decreased coverage  9.07445e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0578  CDS  NC_009943  647434  647817  384  dinitrogenase iron-molybdenum cofactor biosynthesis protein  YP_001528465  decreased coverage  3.33668e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0605  CDS  NC_009943  675400  676245  846  nucleotidyl transferase  YP_001528492  decreased coverage  5.62862e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0606  CDS  NC_009943  676293  676568  276  hypothetical protein  YP_001528493  decreased coverage  4.13276e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0607  CDS  NC_009943  676602  676892  291  hypothetical protein  YP_001528494  decreased coverage  5.4884e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0626  CDS  NC_009943  744366  745526  1161  acyl-CoA dehydrogenase domain-containing protein  YP_001528513  decreased coverage  2.65202e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0627  CDS  NC_009943  745533  746345  813  oxidoreductase FAD/NAD(P)-binding subunit  YP_001528514  decreased coverage  5.9067e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0634  CDS  NC_009943  752822  753709  888  hypothetical protein  YP_001528521  decreased coverage  0.000176961  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0635  CDS  NC_009943  753719  755017  1299  CBS domain-containing protein  YP_001528522  decreased coverage  0.00186716  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0654  CDS  NC_009943  780932  782062  1131  hypothetical protein  YP_001528541  decreased coverage  1.03467e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0669  CDS  NC_009943  791783  793054  1272  histidyl-tRNA synthetase  YP_001528556  decreased coverage  7.05937e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0704  CDS  NC_009943  838176  838547  372  30S ribosomal protein S12  YP_001528591  decreased coverage  7.38801e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0705  CDS  NC_009943  838608  839078  471  30S ribosomal protein S7  YP_001528592  decreased coverage  1.1534e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0706  CDS  NC_009943  839167  840360  1194  elongation factor Tu  YP_001528593  decreased coverage  2.40692e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0755  CDS  NC_009943  878748  879269  522  NifU domain-containing protein  YP_001528642  decreased coverage  8.03052e-10  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0774  CDS  NC_009943  899915  900409  495  hypothetical protein  YP_001528661  decreased coverage  5.67369e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0850  CDS  NC_009943  995030  995338  309  glycoside hydrolase family protein  YP_001528737  decreased coverage  5.4884e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0904  CDS  NC_009943  1056071  1057615  1545  site-specific DNA-methyltransferase (adenine-specific)  YP_001528791  decreased coverage  7.34912e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0928  CDS  NC_009943  1082281  1083666  1386  TetR family transcriptional regulator  YP_001528815  decreased coverage  3.84359e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1002  CDS  NC_009943  1177046  1178320  1275  sulfate adenylyltransferase  YP_001528889  decreased coverage  3.29469e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1008  CDS  NC_009943  1186496  1186840  345  helix-hairpin-helix repeat-containing competence protein ComEA  YP_001528895  decreased coverage  4.63906e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1009  CDS  NC_009943  1186967  1188874  1908  polysaccharide biosynthesis protein CapD  YP_001528896  decreased coverage  6.85319e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1026  CDS  NC_009943  1209529  1211028  1500  sodium:neurotransmitter symporter  YP_001528913  decreased coverage  4.58175e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1040  CDS  NC_009943  1224707  1225588  882  PDZ/DHR/GLGF domain-containing protein  YP_001528927  decreased coverage  6.38276e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1094  CDS  NC_009943  1298905  1300686  1782  TrkA domain-containing protein  YP_001528978  decreased coverage  0.00281936  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1099  CDS  NC_009943  1307995  1310448  2454  ATP-dependent protease La  YP_001528983  decreased coverage  1.82753e-05  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1125  CDS  NC_009943  1335323  1335685  363  hypothetical protein  YP_001529009  decreased coverage  2.83698e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1194  CDS  NC_009943  1426056  1427171  1116  hypothetical protein  YP_001529077  decreased coverage  1.62993e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1201  CDS  NC_009943  1435427  1435885  459  CBS domain-containing protein  YP_001529084  decreased coverage  9.63836e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1251  CDS  NC_009943  1495139  1496074  936  membrane protein  YP_001529134  decreased coverage  1.25823e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1264  CDS  NC_009943  1512143  1512979  837  hypothetical protein  YP_001529147  decreased coverage  0.000195953  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1305  CDS  NC_009943  1557362  1559176  1815  acyl-CoA dehydrogenase domain-containing protein  YP_001529188  decreased coverage  7.12718e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1353  CDS  NC_009943  1609905  1611188  1284  hypothetical protein  YP_001529234  decreased coverage  2.51364e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1372  CDS  NC_009943  1632819  1633253  435  hypothetical protein  YP_001529253  decreased coverage  7.66796e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1396  CDS  NC_009943  1658517  1659353  837  dihydrodipicolinate reductase  YP_001529277  decreased coverage  0.000158881  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1417  CDS  NC_009943  1686680  1688746  2067  hypothetical protein  YP_001529298  decreased coverage  0.000449737  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1422  CDS  NC_009943  1694221  1695150  930  chaperone DnaJ domain-containing protein  YP_001529303  decreased coverage  4.19249e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1489  CDS  NC_009943  1777593  1778165  573  SH3 type 3 domain-containing protein  YP_001529370  decreased coverage  2.3318e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1512  CDS  NC_009943  1805179  1806108  930  thioredoxin reductase  YP_001529393  decreased coverage  7.15153e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1513  CDS  NC_009943  1806113  1806442  330  thioredoxin  YP_001529394  decreased coverage  4.29326e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1530  CDS  NC_009943  1824294  1824503  210  hypothetical protein  YP_001529411  decreased coverage  8.19026e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1539  CDS  NC_009943  1832327  1832710  384  pyridoxamine 5'-phosphate oxidase-related FMN-binding  YP_001529420  decreased coverage  5.88533e-10  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1540  CDS  NC_009943  1832738  1833946  1209  methyltransferase type 11  YP_001529421  decreased coverage  2.74527e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1635  CDS  NC_009943  1944101  1944643  543  NapC/NirT cytochrome c domain-containing protein  YP_001529516  decreased coverage  6.71983e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1683  CDS  NC_009943  2013319  2014233  915  3-hydroxybutyryl-CoA dehydrogenase  YP_001529564  decreased coverage  6.83319e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1692  CDS  NC_009943  2024634  2025011  378  hypothetical protein  YP_001529573  decreased coverage  0.00204823  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1693  CDS  NC_009943  2025021  2025452  432  hypothetical protein  YP_001529574  decreased coverage  0.00247694  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1770  CDS  NC_009943  2132668  2133639  972  alpha/beta hydrolase fold  YP_001529651  decreased coverage  0.00973065  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1924  CDS  NC_009943  2325157  2326140  984  electron transfer flavoprotein alpha subunit  YP_001529805  decreased coverage  0.00223557  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1955  CDS  NC_009943  2366891  2367496  606  hypothetical protein  YP_001529836  decreased coverage  1.03028e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1956  CDS  NC_009943  2367740  2368600  861  hypothetical protein  YP_001529837  decreased coverage  3.69208e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2014  CDS  NC_009943  2440159  2443143  2985  peptidase C25 gingipain  YP_001529895  decreased coverage  0.0011841  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2034  CDS  NC_009943  2463999  2465051  1053  N-acetyl-gamma-glutamyl-phosphate reductase  YP_001529915  decreased coverage  2.33071e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2035  CDS  NC_009943  2465857  2467044  1188  putative RNA methylase  YP_001529916  decreased coverage  3.06959e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2086  CDS  NC_009943  2535280  2535840  561  hypothetical protein  YP_001529967  decreased coverage  1.75863e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2104  CDS  NC_009943  2555801  2556553  753  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001529985  decreased coverage  3.03229e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2110  CDS  NC_009943  2562757  2563755  999  KpsF/GutQ family protein  YP_001529991  decreased coverage  6.13072e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2136  CDS  NC_009943  2593168  2593641  474  GCN5-related N-acetyltransferase  YP_001530017  decreased coverage  9.41211e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2137  CDS  NC_009943  2593645  2594526  882  hypothetical protein  YP_001530018  decreased coverage  9.99013e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2211  CDS  NC_009943  2683291  2684115  825  TonB family protein  YP_001530092  decreased coverage  5.85223e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2212  CDS  NC_009943  2684159  2684581  423  biopolymer transport TolR  YP_001530093  decreased coverage  9.48089e-10  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2213  CDS  NC_009943  2684578  2685300  723  Tol-Pal system TolQ  YP_001530094  decreased coverage  3.50133e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2248  CDS  NC_009943  2724195  2725019  825  enoyl-CoA hydratase/isomerase  YP_001530129  decreased coverage  2.26427e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2249  CDS  NC_009943  2725054  2726142  1089  hypothetical protein  YP_001530130  decreased coverage  9.78624e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2250  CDS  NC_009943  2726733  2728349  1617  cytochrome c class III  YP_001530131  decreased coverage  1.97158e-07  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2287  CDS  NC_009943  2772844  2773419  576  hypothetical protein  YP_001530168  decreased coverage  0.000693378  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2330  CDS  NC_009943  2813657  2814535  879  methylenetetrahydrofolate reductase (NAD(P)H)  YP_001530211  decreased coverage  3.46686e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2351  CDS  NC_009943  2836032  2836793  762  histidine biosynthesis protein  YP_001530232  decreased coverage  0.000231066  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2425  CDS  NC_009943  2928028  2929698  1671  hypothetical protein  YP_001530306  decreased coverage  1.03631e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2442  CDS  NC_009943  2952318  2953892  1575  protein-export membrane protein SecD  YP_001530323  decreased coverage  3.11445e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2474  CDS  NC_009943  3001291  3002256  966  RNA polymerase sigma 70 family subunit  YP_001530355  decreased coverage  6.32175e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2505  CDS  NC_009943  3033723  3034718  996  hypothetical protein  YP_001530386  decreased coverage  1.00806e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2532  CDS  NC_009943  3063635  3064585  951  hypothetical protein  YP_001530413  decreased coverage  1.06754e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2546  CDS  NC_009943  3081108  3081770  663  hypothetical protein  YP_001530427  decreased coverage  1.33101e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2547  CDS  NC_009943  3081835  3083970  2136  molybdopterin oxidoreductase  YP_001530428  decreased coverage  0.00181061  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2568  CDS  NC_009943  3103755  3104504  750  orotidine 5'-phosphate decarboxylase  YP_001530448  decreased coverage  0.000104068  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2569  CDS  NC_009943  3104519  3105208  690  anaerobic ribonucleoside-triphosphate reductase activating protein  YP_001530449  decreased coverage  0.000247399  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2577  CDS  NC_009943  3118392  3119135  744  histone deacetylase superfamily protein  YP_001530457  decreased coverage  5.13605e-08  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2578  CDS  NC_009943  3119316  3119816  501  hypothetical protein  YP_001530458  decreased coverage  6.85177e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2611  CDS  NC_009943  3153181  3153525  345  hypothetical protein  YP_001530491  decreased coverage  4.37606e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2612  CDS  NC_009943  3153670  3153861  192  hypothetical protein  YP_001530492  decreased coverage  1.20273e-10  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2649  CDS  NC_009943  3190081  3191391  1311  cytochrome bd ubiquinol oxidase subunit I  YP_001530529  decreased coverage  2.62773e-06  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2703  CDS  NC_009943  3262117  3262782  666  hypothetical protein  YP_001530583  decreased coverage  2.26427e-09  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
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