128 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Dole_0027  CDS  NC_009943  28802  29572  +  771  hypothetical protein  YP_001527914  decreased coverage  0.00000000116236  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0043  CDS  NC_009943  51701  54091  +  2391  LVIVD repeat-containing protein  YP_001527930  decreased coverage  0.0000100601  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0064  CDS  NC_009943  72123  72590  +  468  hypothetical protein  YP_001527951  decreased coverage  0.00196397  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0135  CDS  NC_009943  148111  150051  -  1941  1A family penicillin-binding protein  YP_001528022  decreased coverage  0.00000146416  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0136  CDS  NC_009943  150159  150455  +  297  hypothetical protein  YP_001528023  decreased coverage  0.000000000582545  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0160  CDS  NC_009943  175844  176248  +  405  UspA domain-containing protein  YP_001528047  decreased coverage  0.000000438875  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0161  CDS  NC_009943  176276  177982  -  1707  TrkA domain-containing protein  YP_001528048  decreased coverage  0.000200021  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0309  CDS  NC_009943  353467  354090  +  624  RnfA-Nqr electron transport subunit  YP_001528196  decreased coverage  0.00114498  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0329  CDS  NC_009943  376692  379655  -  2964  type IV pilus secretin PilQ  YP_001528216  decreased coverage  0.00519282  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0344  CDS  NC_009943  393936  396110  +  2175  ferrous iron transport protein B  YP_001528231  decreased coverage  0.00337716  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0363  CDS  NC_009943  417621  420425  -  2805  parallel beta-helix repeat-containing protein  YP_001528250  decreased coverage  0.000494695  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0369  CDS  NC_009943  426552  427478  -  927  DNA binding domain-containing protein  YP_001528256  decreased coverage  0.0000403691  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0370  CDS  NC_009943  427693  428667  +  975  phosphoesterase domain-containing protein  YP_001528257  decreased coverage  0.0000000155392  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0425  CDS  NC_009943  490042  490413  -  372  zinc-resistance associated protein  YP_001528312  decreased coverage  0.000113205  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0440  CDS  NC_009943  508158  510020  +  1863  thiamine pyrophosphate binding domain-containing protein  YP_001528327  decreased coverage  0.000000968749  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0449  CDS  NC_009943  517312  517833  +  522  hypothetical protein  YP_001528336  decreased coverage  0.00000134264  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0564  CDS  NC_009943  632711  633049  -  339  nitrogen regulatory protein P-II  YP_001528451  decreased coverage  0.00000000717962  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0565  CDS  NC_009943  633089  634375  -  1287  ammonium transporter  YP_001528452  decreased coverage  0.000000907445  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0578  CDS  NC_009943  647434  647817  +  384  dinitrogenase iron-molybdenum cofactor biosynthesis protein  YP_001528465  decreased coverage  0.000000333668  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0605  CDS  NC_009943  675400  676245  +  846  nucleotidyl transferase  YP_001528492  decreased coverage  0.00000562862  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0606  CDS  NC_009943  676293  676568  +  276  hypothetical protein  YP_001528493  decreased coverage  0.000000413276  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0607  CDS  NC_009943  676602  676892  +  291  hypothetical protein  YP_001528494  decreased coverage  0.00000054884  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0626  CDS  NC_009943  744366  745526  +  1161  acyl-CoA dehydrogenase domain-containing protein  YP_001528513  decreased coverage  0.000000265202  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0627  CDS  NC_009943  745533  746345  +  813  oxidoreductase FAD/NAD(P)-binding subunit  YP_001528514  decreased coverage  0.000000059067  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0634  CDS  NC_009943  752822  753709  -  888  hypothetical protein  YP_001528521  decreased coverage  0.000176961  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0635  CDS  NC_009943  753719  755017  -  1299  CBS domain-containing protein  YP_001528522  decreased coverage  0.00186716  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0654  CDS  NC_009943  780932  782062  +  1131  hypothetical protein  YP_001528541  decreased coverage  0.0000103467  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0669  CDS  NC_009943  791783  793054  +  1272  histidyl-tRNA synthetase  YP_001528556  decreased coverage  0.0000000705937  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0704  CDS  NC_009943  838176  838547  +  372  30S ribosomal protein S12  YP_001528591  decreased coverage  0.00000000738801  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0705  CDS  NC_009943  838608  839078  +  471  30S ribosomal protein S7  YP_001528592  decreased coverage  0.00000011534  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0706  CDS  NC_009943  839167  840360  +  1194  elongation factor Tu  YP_001528593  decreased coverage  0.00000240692  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0755  CDS  NC_009943  878748  879269  +  522  NifU domain-containing protein  YP_001528642  decreased coverage  0.000000000803052  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0774  CDS  NC_009943  899915  900409  -  495  hypothetical protein  YP_001528661  decreased coverage  0.0000567369  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0850  CDS  NC_009943  995030  995338  -  309  glycoside hydrolase family protein  YP_001528737  decreased coverage  0.00000054884  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0904  CDS  NC_009943  1056071  1057615  +  1545  site-specific DNA-methyltransferase (adenine-specific)  YP_001528791  decreased coverage  0.0000734912  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_0928  CDS  NC_009943  1082281  1083666  -  1386  TetR family transcriptional regulator  YP_001528815  decreased coverage  0.0000000384359  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1002  CDS  NC_009943  1177046  1178320  -  1275  sulfate adenylyltransferase  YP_001528889  decreased coverage  0.0000000329469  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1008  CDS  NC_009943  1186496  1186840  +  345  helix-hairpin-helix repeat-containing competence protein ComEA  YP_001528895  decreased coverage  0.0000000463906  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1009  CDS  NC_009943  1186967  1188874  +  1908  polysaccharide biosynthesis protein CapD  YP_001528896  decreased coverage  0.00000685319  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1026  CDS  NC_009943  1209529  1211028  -  1500  sodium:neurotransmitter symporter  YP_001528913  decreased coverage  0.0000458175  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1040  CDS  NC_009943  1224707  1225588  +  882  PDZ/DHR/GLGF domain-containing protein  YP_001528927  decreased coverage  0.000000638276  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1094  CDS  NC_009943  1298905  1300686  -  1782  TrkA domain-containing protein  YP_001528978  decreased coverage  0.00281936  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1099  CDS  NC_009943  1307995  1310448  -  2454  ATP-dependent protease La  YP_001528983  decreased coverage  0.0000182753  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1125  CDS  NC_009943  1335323  1335685  +  363  hypothetical protein  YP_001529009  decreased coverage  0.0000000283698  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1194  CDS  NC_009943  1426056  1427171  +  1116  hypothetical protein  YP_001529077  decreased coverage  0.000000162993  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1201  CDS  NC_009943  1435427  1435885  +  459  CBS domain-containing protein  YP_001529084  decreased coverage  0.00000963836  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1251  CDS  NC_009943  1495139  1496074  -  936  membrane protein  YP_001529134  decreased coverage  0.0000000125823  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1264  CDS  NC_009943  1512143  1512979  +  837  hypothetical protein  YP_001529147  decreased coverage  0.000195953  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1305  CDS  NC_009943  1557362  1559176  +  1815  acyl-CoA dehydrogenase domain-containing protein  YP_001529188  decreased coverage  0.000000712718  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1353  CDS  NC_009943  1609905  1611188  +  1284  hypothetical protein  YP_001529234  decreased coverage  0.00000251364  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1372  CDS  NC_009943  1632819  1633253  -  435  hypothetical protein  YP_001529253  decreased coverage  0.00000000766796  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1396  CDS  NC_009943  1658517  1659353  -  837  dihydrodipicolinate reductase  YP_001529277  decreased coverage  0.000158881  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1417  CDS  NC_009943  1686680  1688746  +  2067  hypothetical protein  YP_001529298  decreased coverage  0.000449737  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1422  CDS  NC_009943  1694221  1695150  +  930  chaperone DnaJ domain-containing protein  YP_001529303  decreased coverage  0.00000419249  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1489  CDS  NC_009943  1777593  1778165  +  573  SH3 type 3 domain-containing protein  YP_001529370  decreased coverage  0.0000000023318  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1512  CDS  NC_009943  1805179  1806108  -  930  thioredoxin reductase  YP_001529393  decreased coverage  0.000000715153  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1513  CDS  NC_009943  1806113  1806442  -  330  thioredoxin  YP_001529394  decreased coverage  0.00000000429326  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1530  CDS  NC_009943  1824294  1824503  -  210  hypothetical protein  YP_001529411  decreased coverage  0.00000819026  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1539  CDS  NC_009943  1832327  1832710  -  384  pyridoxamine 5'-phosphate oxidase-related FMN-binding  YP_001529420  decreased coverage  0.000000000588533  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1540  CDS  NC_009943  1832738  1833946  -  1209  methyltransferase type 11  YP_001529421  decreased coverage  0.0000000274527  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1635  CDS  NC_009943  1944101  1944643  -  543  NapC/NirT cytochrome c domain-containing protein  YP_001529516  decreased coverage  0.00000671983  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1683  CDS  NC_009943  2013319  2014233  -  915  3-hydroxybutyryl-CoA dehydrogenase  YP_001529564  decreased coverage  0.00000000683319  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1692  CDS  NC_009943  2024634  2025011  +  378  hypothetical protein  YP_001529573  decreased coverage  0.00204823  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1693  CDS  NC_009943  2025021  2025452  -  432  hypothetical protein  YP_001529574  decreased coverage  0.00247694  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1770  CDS  NC_009943  2132668  2133639  -  972  alpha/beta hydrolase fold  YP_001529651  decreased coverage  0.00973065  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1924  CDS  NC_009943  2325157  2326140  +  984  electron transfer flavoprotein alpha subunit  YP_001529805  decreased coverage  0.00223557  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1955  CDS  NC_009943  2366891  2367496  +  606  hypothetical protein  YP_001529836  decreased coverage  0.00000103028  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_1956  CDS  NC_009943  2367740  2368600  -  861  hypothetical protein  YP_001529837  decreased coverage  0.00000369208  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2014  CDS  NC_009943  2440159  2443143  -  2985  peptidase C25 gingipain  YP_001529895  decreased coverage  0.0011841  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2034  CDS  NC_009943  2463999  2465051  -  1053  N-acetyl-gamma-glutamyl-phosphate reductase  YP_001529915  decreased coverage  0.000000233071  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2035  CDS  NC_009943  2465857  2467044  +  1188  putative RNA methylase  YP_001529916  decreased coverage  0.000000306959  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2086  CDS  NC_009943  2535280  2535840  -  561  hypothetical protein  YP_001529967  decreased coverage  0.00000000175863  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2104  CDS  NC_009943  2555801  2556553  +  753  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001529985  decreased coverage  0.0000000303229  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2110  CDS  NC_009943  2562757  2563755  +  999  KpsF/GutQ family protein  YP_001529991  decreased coverage  0.0000000613072  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2136  CDS  NC_009943  2593168  2593641  +  474  GCN5-related N-acetyltransferase  YP_001530017  decreased coverage  0.00000000941211  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2137  CDS  NC_009943  2593645  2594526  +  882  hypothetical protein  YP_001530018  decreased coverage  0.0000000999013  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2211  CDS  NC_009943  2683291  2684115  -  825  TonB family protein  YP_001530092  decreased coverage  0.00000000585223  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2212  CDS  NC_009943  2684159  2684581  -  423  biopolymer transport TolR  YP_001530093  decreased coverage  0.000000000948089  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2213  CDS  NC_009943  2684578  2685300  -  723  Tol-Pal system TolQ  YP_001530094  decreased coverage  0.00000000350133  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2248  CDS  NC_009943  2724195  2725019  +  825  enoyl-CoA hydratase/isomerase  YP_001530129  decreased coverage  0.00000000226427  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2249  CDS  NC_009943  2725054  2726142  +  1089  hypothetical protein  YP_001530130  decreased coverage  0.00000000978624  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2250  CDS  NC_009943  2726733  2728349  +  1617  cytochrome c class III  YP_001530131  decreased coverage  0.000000197158  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2287  CDS  NC_009943  2772844  2773419  -  576  hypothetical protein  YP_001530168  decreased coverage  0.000693378  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2330  CDS  NC_009943  2813657  2814535  -  879  methylenetetrahydrofolate reductase (NAD(P)H)  YP_001530211  decreased coverage  0.00000000346686  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2351  CDS  NC_009943  2836032  2836793  +  762  histidine biosynthesis protein  YP_001530232  decreased coverage  0.000231066  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2425  CDS  NC_009943  2928028  2929698  +  1671  hypothetical protein  YP_001530306  decreased coverage  0.00000103631  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2442  CDS  NC_009943  2952318  2953892  +  1575  protein-export membrane protein SecD  YP_001530323  decreased coverage  0.00000311445  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2474  CDS  NC_009943  3001291  3002256  +  966  RNA polymerase sigma 70 family subunit  YP_001530355  decreased coverage  0.00000000632175  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2505  CDS  NC_009943  3033723  3034718  +  996  hypothetical protein  YP_001530386  decreased coverage  0.00000100806  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2532  CDS  NC_009943  3063635  3064585  +  951  hypothetical protein  YP_001530413  decreased coverage  0.0000000106754  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2546  CDS  NC_009943  3081108  3081770  +  663  hypothetical protein  YP_001530427  decreased coverage  0.00000133101  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2547  CDS  NC_009943  3081835  3083970  +  2136  molybdopterin oxidoreductase  YP_001530428  decreased coverage  0.00181061  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2568  CDS  NC_009943  3103755  3104504  -  750  orotidine 5'-phosphate decarboxylase  YP_001530448  decreased coverage  0.000104068  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2569  CDS  NC_009943  3104519  3105208  -  690  anaerobic ribonucleoside-triphosphate reductase activating protein  YP_001530449  decreased coverage  0.000247399  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2577  CDS  NC_009943  3118392  3119135  -  744  histone deacetylase superfamily protein  YP_001530457  decreased coverage  0.0000000513605  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2578  CDS  NC_009943  3119316  3119816  +  501  hypothetical protein  YP_001530458  decreased coverage  0.00000000685177  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2611  CDS  NC_009943  3153181  3153525  +  345  hypothetical protein  YP_001530491  decreased coverage  0.00000000437606  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2612  CDS  NC_009943  3153670  3153861  +  192  hypothetical protein  YP_001530492  decreased coverage  0.000000000120273  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2649  CDS  NC_009943  3190081  3191391  +  1311  cytochrome bd ubiquinol oxidase subunit I  YP_001530529  decreased coverage  0.00000262773  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Dole_2703  CDS  NC_009943  3262117  3262782  +  666  hypothetical protein  YP_001530583  decreased coverage  0.00000000226427  n/a    Desulfococcus oleovorans Hxd3  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>