183 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Shewana3_0030  CDS  NC_008577  36603  37157  555  protoporphyrinogen oxidase  YP_867681  decreased coverage  2.5966e-05  hitchhiker  9.9426e-07  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0031  CDS  NC_008577  37204  38646  1443  TrkH family potassium uptake protein  YP_867682  decreased coverage  0.000580956  hitchhiker  1.65872e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0125  CDS  NC_008577  142187  142750  564  chorismate lyase  YP_867775  normal  0.145702  decreased coverage  2.41246e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0169  CDS  NC_008577  202502  203053  552  ADP-ribose diphosphatase NudE  YP_867819  decreased coverage  0.00239764  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0181  CDS  NC_008577  214781  215245  465  RNP-1-like RNA-binding protein  YP_867831  decreased coverage  8.14275e-08  normal  0.581259  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0237  CDS  NC_008577  266253  266834  582  redoxin domain-containing protein  YP_867887  decreased coverage  1.32187e-06  unclonable  4.5327e-11  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0254  CDS  NC_008577  286327  286818  492  protein of unknown function, Spy-related  YP_867903  decreased coverage  5.50011e-05  hitchhiker  1.61676e-09  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0272  CDS  NC_008577  305555  307471  1917  methyl-accepting chemotaxis sensory transducer  YP_867921  decreased coverage  0.00090491  hitchhiker  3.49734e-07  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0287  CDS  NC_008577  321158  321349  192  hypothetical protein  YP_867936  hitchhiker  0.000322851  decreased coverage  1.41072e-09  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0288  CDS  NC_008577  321362  321874  513  peptidase M23B  YP_867937  hitchhiker  0.00195161  decreased coverage  1.76689e-09  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0347  CDS  NC_008577  379699  380595  897  hypothetical protein  YP_867996  decreased coverage  4.0068e-07  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0386  CDS  NC_008577  446502  447434  933  porphobilinogen deaminase  YP_868035  decreased coverage  0.00551577  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0415  CDS  NC_008577  473002  473736  735  hypothetical protein  YP_868064  normal  decreased coverage  0.000349234  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0427  CDS  NC_008577  487935  489941  2007  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase  YP_868076  decreased coverage  0.00328554  normal  0.268378  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0553  CDS  NC_008577  646160  646684  525  hypothetical protein  YP_868198  decreased coverage  4.54785e-07  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0594  CDS  NC_008577  696509  697900  1392  cell wall hydrolase/autolysin  YP_868239  unclonable  1.69523e-07  decreased coverage  2.80884e-07  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0596  CDS  NC_008577  699889  700779  891  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_868241  normal  0.888618  decreased coverage  2.61712e-07  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0601  CDS  NC_008577  704923  705513  591  ubiquinol-cytochrome c reductase, iron-sulfur subunit  YP_868246  decreased coverage  1.17425e-06  hitchhiker  5.53459e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0617  CDS  NC_008577  722231  722866  636  cAMP-regulatory protein  YP_868262  decreased coverage  1.35204e-07  normal  0.325091  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0638  CDS  NC_008577  751959  755630  3672  hypothetical protein  YP_868282  normal  decreased coverage  1.40616e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0639  CDS  NC_008577  755630  756295  666  hypothetical protein  YP_868283  normal  decreased coverage  2.10069e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0640  CDS  NC_008577  756338  757558  1221  hypothetical protein  YP_868284  normal  decreased coverage  3.56379e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0641  CDS  NC_008577  757546  758418  873  hypothetical protein  YP_868285  normal  decreased coverage  2.77282e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0642  CDS  NC_008577  758809  760059  1251  sodium:dicarboxylate symporter  YP_868286  normal  decreased coverage  3.27788e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0665  CDS  NC_008577  786678  787370  693  OmpA/MotB domain-containing protein  YP_868309  decreased coverage  1.80741e-07  normal  0.0736379  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0692  CDS  NC_008577  809168  809596  429  50S ribosomal protein L13  YP_868336  unclonable  5.56575e-09  decreased coverage  1.94665e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0693  CDS  NC_008577  809611  810003  393  30S ribosomal protein S9  YP_868337  unclonable  5.79549e-09  decreased coverage  1.93008e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0724  CDS  NC_008577  840761  841456  696  hypothetical protein  YP_868368  decreased coverage  1.5789e-07  hitchhiker  0.00185842  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0732  CDS  NC_008577  848757  851033  2277  DNA topoisomerase IV subunit A  YP_868376  normal  0.207588  decreased coverage  6.34577e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0733  CDS  NC_008577  851205  852284  1080  porin  YP_868377  unclonable  5.51944e-08  decreased coverage  3.18488e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0734  CDS  NC_008577  852715  853779  1065  porin  YP_868378  decreased coverage  4.94692e-05  decreased coverage  3.62774e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0735  CDS  NC_008577  854196  855029  834  UBA/THIF-type NAD/FAD binding protein  YP_868379  normal  0.349045  decreased coverage  3.65596e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0736  CDS  NC_008577  855172  856803  1632  ATPase domain-containing protein  YP_868380  normal  decreased coverage  4.90957e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0845  CDS  NC_008577  978827  980383  1557  anaerobic nitric oxide reductase transcription regulator  YP_868489  decreased coverage  4.22276e-06  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0854  CDS  NC_008577  991421  992947  1527  NAD(P) transhydrogenase subunit alpha  YP_868498  decreased coverage  0.00327911  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0861  CDS  NC_008577  1003095  1003979  885  phospholipase A1  YP_868505  decreased coverage  0.000319394  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0889  CDS  NC_008577  1034901  1036577  1677  glucan biosynthesis protein D  YP_868533  decreased coverage  6.29377e-06  normal  0.387819  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0937  CDS  NC_008577  1096680  1098731  2052  TonB-dependent receptor  YP_868578  decreased coverage  2.03673e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0938  CDS  NC_008577  1099135  1100469  1335  Na(+)-translocating NADH-quinone reductase subunit A  YP_868579  decreased coverage  2.25132e-06  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_0966  CDS  NC_008577  1133235  1134047  813  dihydrodipicolinate reductase  YP_868607  decreased coverage  2.39889e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1099  CDS  NC_008577  1293461  1294003  543  6,7-dimethyl-8-ribityllumazine synthase  YP_868740  decreased coverage  5.81145e-08  normal  0.593751  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1114  CDS  NC_008577  1312902  1313780  879  nucleoside triphosphate pyrophosphohydrolase  YP_868755  decreased coverage  0.00704325  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1115  CDS  NC_008577  1313897  1315537  1641  CTP synthetase  YP_868756  decreased coverage  8.91455e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1144  CDS  NC_008577  1349390  1352671  3282  peptidase S41  YP_868785  decreased coverage  0.00183878  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1181  CDS  NC_008577  1388541  1389659  1119  A/G-specific DNA-adenine glycosylase  YP_868822  decreased coverage  1.1452e-06  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1297  CDS  NC_008577  1510970  1511590  621  TetR family transcriptional regulator  YP_868937  decreased coverage  0.00583227  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1298  CDS  NC_008577  1511704  1512651  948  hypothetical protein  YP_868938  decreased coverage  0.00235334  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1351  CDS  NC_008577  1564352  1564759  408  flagellar biosynthesis protein, FliO  YP_868991  decreased coverage  0.00422095  normal  0.37669  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1374  CDS  NC_008577  1587769  1588269  501  transcription antitermination protein nusG  YP_869014  decreased coverage  8.14975e-07  hitchhiker  4.20235e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1375  CDS  NC_008577  1588920  1591433  2514  polysaccharide export protein  YP_869015  normal  0.0193694  decreased coverage  2.8911e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1405  CDS  NC_008577  1622695  1623444  750  electron transfer flavoprotein beta-subunit  YP_869045  decreased coverage  2.00993e-07  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1406  CDS  NC_008577  1623445  1624371  927  electron transfer flavoprotein, alpha subunit  YP_869046  decreased coverage  4.28424e-07  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1513  CDS  NC_008577  1761659  1763608  1950  TonB-dependent receptor  YP_869153  decreased coverage  3.09269e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1566  CDS  NC_008577  1830178  1830957  780  putative sulfate transport protein CysZ  YP_869206  decreased coverage  2.61033e-06  hitchhiker  6.95889e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1658  CDS  NC_008577  1948635  1949717  1083  RND family efflux transporter MFP subunit  YP_869297  decreased coverage  0.000232607  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1707  CDS  NC_008577  2009604  2009951  348  succinate dehydrogenase subunit D  YP_869346  decreased coverage  0.00469564  normal  0.576131  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1715  CDS  NC_008577  2019689  2020201  513  GCN5-related N-acetyltransferase  YP_869354  decreased coverage  6.5025e-06  normal  0.148419  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1716  CDS  NC_008577  2020295  2020726  432  ferric uptake regulator  YP_869355  decreased coverage  4.68341e-06  normal  0.147817  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1733  CDS  NC_008577  2041544  2041975  432  thioesterase superfamily protein  YP_869372  decreased coverage  0.00331681  normal  0.113032  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1734  CDS  NC_008577  2042126  2043190  1065  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_869373  decreased coverage  0.000161072  normal  0.128894  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1735  CDS  NC_008577  2043372  2044184  813  hypothetical protein  YP_869374  decreased coverage  0.0066836  normal  0.176615  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1907  CDS  NC_008577  2263547  2264617  1071  iron-containing alcohol dehydrogenase  YP_869544  decreased coverage  6.81421e-06  unclonable  9.09138e-11  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_1956  CDS  NC_008577  2327610  2328227  618  Holliday junction DNA helicase RuvA  YP_869593  decreased coverage  0.00381182  normal  0.897117  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2020  CDS  NC_008577  2412921  2416034  3114  phage integrase family protein  YP_869657  decreased coverage  0.00692434  decreased coverage  9.2621e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2021  CDS  NC_008577  2416165  2417028  864  metal dependent phosphohydrolase  YP_869658  decreased coverage  3.15761e-05  decreased coverage  2.41246e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2022  CDS  NC_008577  2417021  2418244  1224  phage integrase family protein  YP_869659  normal  0.0581728  decreased coverage  3.56379e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2023  CDS  NC_008577  2418237  2418473  237  hypothetical protein  YP_869660  normal  0.220244  decreased coverage  1.87933e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2024  CDS  NC_008577  2418595  2418819  225  hypothetical protein  YP_869661  normal  0.217828  decreased coverage  1.8107e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2083  CDS  NC_008577  2494497  2496401  1905  glycoside hydrolase family protein  YP_869719  hitchhiker  0.000179948  decreased coverage  3.21687e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2084  CDS  NC_008577  2496581  2497336  756  permease  YP_869720  hitchhiker  2.25949e-05  decreased coverage  1.44994e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2085  CDS  NC_008577  2497516  2500353  2838  TonB-dependent receptor  YP_869721  unclonable  5.9831e-05  decreased coverage  3.24721e-09  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2086  CDS  NC_008577  2500940  2504305  3366  beta-xylosidase-like protein  YP_869722  hitchhiker  0.00280414  decreased coverage  4.69917e-08  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2107  CDS  NC_008577  2531582  2533018  1437  cbb3-type cytochrome c oxidase subunit I  YP_869743  decreased coverage  2.91531e-05  normal  0.555524  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2134  CDS  NC_008577  2559733  2561385  1653  phosphoglucomutase  YP_869770  normal  0.40825  decreased coverage  1.49403e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2135  CDS  NC_008577  2561457  2562008  552  replication initiation regulator SeqA  YP_869771  hitchhiker  0.00104581  decreased coverage  7.41326e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2136  CDS  NC_008577  2562280  2563080  801  alpha/beta hydrolase fold  YP_869772  hitchhiker  4.06984e-05  decreased coverage  7.41326e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2137  CDS  NC_008577  2563182  2563403  222  hypothetical protein  YP_869773  hitchhiker  7.57321e-07  decreased coverage  5.62617e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2138  CDS  NC_008577  2563415  2563687  273  LexA regulated protein  YP_869774  hitchhiker  8.22243e-08  decreased coverage  6.10258e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2139  CDS  NC_008577  2563743  2564270  528  flavodoxin FldA  YP_869775  unclonable  9.59174e-09  decreased coverage  6.40703e-06  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2147  CDS  NC_008577  2571878  2573218  1341  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_869783  decreased coverage  3.42411e-06  normal  0.0447313  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2196  CDS  NC_008577  2635685  2636854  1170  PepSY-associated TM helix domain-containing protein  YP_869831  decreased coverage  0.00896823  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2260  CDS  NC_008577  2721519  2722034  516  hypothetical protein  YP_869895  decreased coverage  0.000187561  normal  0.561597  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2261  CDS  NC_008577  2722468  2723460  993  hypothetical protein  YP_869896  decreased coverage  1.01343e-05  normal  0.473461  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2282  CDS  NC_008577  2744161  2744982  822  serine O-acetyltransferase  YP_869917  decreased coverage  4.78112e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2289  CDS  NC_008577  2750925  2754407  3483  transcription-repair coupling factor  YP_869924  decreased coverage  0.00423432  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2290  CDS  NC_008577  2754407  2755432  1026  hypothetical protein  YP_869925  decreased coverage  0.000825064  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2302  CDS  NC_008577  2766330  2767874  1545  fumarase  YP_869937  decreased coverage  0.00101336  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2303  CDS  NC_008577  2767996  2769399  1404  aminodeoxychorismate synthase, subunit I  YP_869938  decreased coverage  3.19402e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2304  CDS  NC_008577  2769425  2770012  588  NUDIX hydrolase  YP_869939  decreased coverage  4.60151e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2305  CDS  NC_008577  2770037  2770372  336  hypothetical protein  YP_869940  decreased coverage  1.41274e-05  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2317  CDS  NC_008577  2789700  2790071  372  hypothetical protein  YP_869952  decreased coverage  6.52187e-08  normal  0.82103  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2318  CDS  NC_008577  2791094  2791942  849  hypothetical protein  YP_869953  decreased coverage  7.59583e-07  normal  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2320  CDS  NC_008577  2792837  2793295  459  methylated-DNA-(protein)-cysteine S-methyltransferase  YP_869955  decreased coverage  9.31054e-08  normal  0.649756  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2321  CDS  NC_008577  2793425  2794237  813  hypothetical protein  YP_869956  decreased coverage  3.33934e-07  normal  0.693673  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2322  CDS  NC_008577  2794401  2795240  840  glutamine amidotransferase, class-II  YP_869957  decreased coverage  4.53875e-07  normal  0.707205  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2342  CDS  NC_008577  2818161  2818523  363  arsenical resistance operon trans-acting repressor ArsD  YP_869977  decreased coverage  7.0879e-06  normal  0.0224625  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2354  CDS  NC_008577  2831908  2835000  3093  phage integrase family protein  YP_869989  normal  0.322733  decreased coverage  7.60795e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2355  CDS  NC_008577  2835013  2835888  876  metal dependent phosphohydrolase  YP_869990  hitchhiker  0.0025797  decreased coverage  2.15512e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2358  CDS  NC_008577  2837441  2837677  237  hypothetical protein  YP_869993  hitchhiker  8.1812e-06  decreased coverage  1.57362e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
Shewana3_2359  CDS  NC_008577  2837756  2838001  246  transposase IS3/IS911 family protein  YP_869994  hitchhiker  7.64898e-06  decreased coverage  1.6732e-05  Shewanella sp. ANA-3  Bacteria 
 
 
-
 
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