21 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
DvMF_0171  CDS  NC_011769  187304  188914  1611  beta-lactamase domain protein  YP_002434599  n/a    decreased coverage  0.000341552  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0253  CDS  NC_011769  288852  289313  462  putative signal transduction histidine kinase  YP_002434678  n/a    decreased coverage  0.00246404  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0254  CDS  NC_011769  289325  290917  1593  response regulator receiver modulated serine phosphatase  YP_002434679  n/a    decreased coverage  0.00196419  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0352  CDS  NC_011769  409755  410540  786  putative phage repressor  YP_002434777  n/a    decreased coverage  0.00411274  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0360  CDS  NC_011769  423036  424775  1740  methyl-accepting chemotaxis sensory transducer  YP_002434785  n/a    decreased coverage  0.00664797  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0417  CDS  NC_011769  489026  492730  3705  pyruvate carboxylase  YP_002434842  n/a    decreased coverage  0.00734861  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0418  CDS  NC_011769  492816  493985  1170  biotin/acetyl-CoA-carboxylase ligase  YP_002434843  n/a    decreased coverage  0.0073656  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0494  CDS  NC_011769  580069  581841  1773  RNA polymerase, sigma 70 subunit, RpoD subfamily  YP_002434919  n/a    decreased coverage  0.00018772  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0496  CDS  NC_011769  583728  586181  2454  Smr protein/MutS2  YP_002434921  n/a    decreased coverage  0.00013691  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0553  CDS  NC_011769  652895  653716  822  CBS domain containing protein  YP_002434978  n/a    decreased coverage  0.000116003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0554  CDS  NC_011769  654043  655611  1569  apolipoprotein N-acyltransferase  YP_002434979  n/a    decreased coverage  7.81227e-05  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0892  CDS  NC_011769  1075631  1076659  1029  hypothetical protein  YP_002435315  n/a    decreased coverage  0.000863231  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0898  CDS  NC_011769  1082059  1083585  1527  pyridine nucleotide-disulphide oxidoreductase dimerisation region  YP_002435321  n/a    decreased coverage  0.00115945  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_0899  CDS  NC_011769  1083563  1084339  777  SNARE associated Golgi protein  YP_002435322  n/a    decreased coverage  5.26315e-05  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_2700  CDS  NC_011769  3416110  3417864  1755  glycosyl transferase family 2  YP_002437107  n/a    decreased coverage  0.00534164  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_2703  CDS  NC_011769  3419978  3422101  2124  hypothetical protein  YP_002437110  n/a    decreased coverage  0.00446751  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_2704  CDS  NC_011769  3422107  3422943  837  glycosyl transferase family 2  YP_002437111  n/a    decreased coverage  0.00294002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_3111  CDS  NC_011769  3923820  3925289  1470  MATE efflux family protein  YP_002437515  n/a    decreased coverage  0.00116438  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_3114  CDS  NC_011769  3927746  3930994  3249  hypothetical protein  YP_002437518  n/a    decreased coverage  0.000894612  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_3160  CDS  NC_011769  3986241  3986660  420  nucleoside diphosphate kinase  YP_002437564  n/a    decreased coverage  0.00622384  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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DvMF_3161  CDS  NC_011769  3986665  3987474  810  pyrroline-5-carboxylate reductase  YP_002437565  n/a    decreased coverage  0.00631355  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria 
 
 
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