52 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tmz1t_0346  CDS  NC_011662  391305  392330  1026  band 7 protein  YP_002354028  decreased coverage  0.00220198  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_0888  CDS  NC_011662  983356  984177  822  ABC transporter related  YP_002354551  decreased coverage  0.00820574  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1083    NC_011662  1181858  1181944  87      decreased coverage  0.00330504  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1099  CDS  NC_011662  1198934  1199734  801  transcriptional regulator, IclR family  YP_002354754  decreased coverage  0.00311315  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1133  CDS  NC_011662  1244705  1245166  462  hypothetical protein  YP_002354788  decreased coverage  0.000547954  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1134  CDS  NC_011662  1245576  1247453  1878  5'-nucleotidase  YP_002354789  decreased coverage  0.00179734  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1243  CDS  NC_011662  1376092  1377654  1563  FAD dependent oxidoreductase  YP_002354898  decreased coverage  0.00622056  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1325  CDS  NC_011662  1460926  1463457  2532  diguanylate cyclase with PAS/PAC sensor  YP_002354980  decreased coverage  0.000657328  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1339  CDS  NC_011662  1483931  1485436  1506  xanthine dehydrogenase, small subunit  YP_002354994  decreased coverage  0.00017372  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1340  CDS  NC_011662  1485489  1486889  1401  xanthine permease  YP_002354995  decreased coverage  0.000141627  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1625  CDS  NC_011662  1820287  1821309  1023  protein of unknown function DUF1555  YP_002355276  decreased coverage  0.00082408  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1626  CDS  NC_011662  1821423  1821998  576  hypothetical protein  YP_002355277  decreased coverage  0.00023257  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1635  CDS  NC_011662  1832679  1833833  1155  protein of unknown function DUF1555  YP_002355286  decreased coverage  0.00691296  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1652  CDS  NC_011662  1853469  1854884  1416  NAD(P)(+) transhydrogenase (AB-specific)  YP_002355303  decreased coverage  0.000557684  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1696  CDS  NC_011662  1903510  1905609  2100  polynucleotide phosphorylase/polyadenylase  YP_002355347  decreased coverage  6.49299e-06  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1697  CDS  NC_011662  1905727  1906152  426  transcriptional regulator, TraR/DksA family  YP_002355348  decreased coverage  1.37678e-05  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1850  CDS  NC_011662  2083492  2084535  1044  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_002355498  decreased coverage  0.00686699  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1870  CDS  NC_011662  2110782  2111720  939  hypothetical protein  YP_002355518  decreased coverage  0.00769715  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1971  CDS  NC_011662  2222737  2226048  3312  AMP-dependent synthetase and ligase  YP_002355618  decreased coverage  0.00733019  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_1995  CDS  NC_011662  2257532  2257693  162  hypothetical protein  YP_002355642  decreased coverage  0.0021468  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2014  CDS  NC_011662  2277189  2277461  273  histone family protein DNA-binding protein  YP_002355660  decreased coverage  0.000105311  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2029    NC_011662  2291370  2291447  78      decreased coverage  0.00840131  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2178  CDS  NC_011662  2451292  2452047  756  30S ribosomal protein S2  YP_002355814  decreased coverage  0.00294119  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2205  CDS  NC_011662  2486268  2487479  1212  cysteine desulfurase IscS  YP_002355841  decreased coverage  0.00230458  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2240  CDS  NC_011662  2523801  2524646  846  phosphoserine phosphatase SerB  YP_002355875  decreased coverage  0.00113806  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2249  CDS  NC_011662  2534926  2535507  582  NADH ubiquinone oxidoreductase 20 kDa subunit  YP_002355884  decreased coverage  0.00641529  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2279  CDS  NC_011662  2563667  2565748  2082  polyphosphate kinase  YP_002355914  decreased coverage  0.00311481  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2295  CDS  NC_011662  2581854  2582351  498  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_002355930  decreased coverage  0.00919711  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2368  CDS  NC_011667  32004  32675  672  Resolvase domain protein  YP_002364197  hitchhiker  1.41034e-06  decreased coverage  1.17936e-09  Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2388  CDS  NC_011667  49238  49924  687  heavy metal response regulator  YP_002364216  decreased coverage  0.000142984  normal  0.119734  Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2389  CDS  NC_011667  49927  51264  1338  heavy metal sensor kinase  YP_002364217  decreased coverage  0.0021647  normal  0.121803  Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2498  CDS  NC_011662  2702435  2702776  342  alkylphosphonate utilization operon protein PhnA  YP_002889477  decreased coverage  0.00301412  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2572  CDS  NC_011662  2777783  2778376  594  hypothetical protein  YP_002889551  decreased coverage  0.00804347  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2655  CDS  NC_011662  2879028  2881394  2367  phosphoenolpyruvate synthase  YP_002889634  decreased coverage  0.00600909  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2691  CDS  NC_011662  2915312  2915491  180  hypothetical protein  YP_002889670  decreased coverage  0.000365614  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2692  CDS  NC_011662  2915499  2916359  861  Flp pilus assembly protein CpaB  YP_002889671  decreased coverage  0.000594167  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2693  CDS  NC_011662  2916346  2917785  1440  type II and III secretion system protein  YP_002889672  decreased coverage  0.000595981  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2811  CDS  NC_011662  3037844  3039691  1848  Aldehyde ferredoxin oxidoreductase  YP_002889787  decreased coverage  0.00127659  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2899  CDS  NC_011662  3140687  3142402  1716  flagellar MS-ring protein  YP_002889875  decreased coverage  0.00622056  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_2983  CDS  NC_011662  3231088  3231816  729  two component transcriptional regulator, winged helix family  YP_002889959  decreased coverage  0.000906081  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3035  CDS  NC_011662  3284192  3285895  1704  30S ribosomal protein S1  YP_002890010  decreased coverage  0.00687642  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3036  CDS  NC_011662  3285986  3287947  1962  bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase  YP_002890011  decreased coverage  0.00127659  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3107  CDS  NC_011662  3362441  3362878  438  protein of unknown function DUF336  YP_002890081  decreased coverage  1.76566e-05  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3334  CDS  NC_011662  3640896  3641171  276  30S ribosomal protein S19  YP_002890306  decreased coverage  7.61945e-08  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3335  CDS  NC_011662  3641182  3642009  828  50S ribosomal protein L2  YP_002890307  decreased coverage  6.45842e-07  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3336  CDS  NC_011662  3642016  3642321  306  50S ribosomal protein L23  YP_002890308  decreased coverage  1.12822e-07  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3337  CDS  NC_011662  3642318  3642938  621  50S ribosomal protein L4  YP_002890309  decreased coverage  3.30441e-07  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3340  CDS  NC_011662  3644099  3645289  1191  elongation factor Tu  YP_002890312  decreased coverage  2.65971e-06  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3341  CDS  NC_011662  3645338  3647437  2100  elongation factor G  YP_002890313  decreased coverage  5.27224e-05  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_3594  CDS  NC_011662  3942247  3943302  1056  Appr-1-p processing domain protein  YP_002890564  decreased coverage  2.10462e-07  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_R0002  rRNA  NC_011662  454429  455955  1527  16S ribosomal RNA    decreased coverage  0.00839807  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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Tmz1t_R0031  tRNA  NC_011662  2277501  2277576  76  tRNA-Val    decreased coverage  7.44729e-05  n/a    Thauera sp. MZ1T  Bacteria 
 
 
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