51 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Xaut_0190  CDS  NC_009720  191770  192027  258  hypothetical protein  YP_001415106  decreased coverage  0.00935608  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0206  CDS  NC_009720  208071  208742  672  monofunctional biosynthetic peptidoglycan transglycosylase  YP_001415122  decreased coverage  0.00937059  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0240  CDS  NC_009720  250477  251004  528  hypothetical protein  YP_001415155  normal  0.0856974  decreased coverage  0.000494637  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0241  CDS  NC_009720  251009  251386  378  hypothetical protein  YP_001415156  normal  0.0136287  decreased coverage  0.000491279  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0242  CDS  NC_009720  251386  251703  318  hypothetical protein  YP_001415157  normal  0.0217716  decreased coverage  0.000504649  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0243  CDS  NC_009720  251703  253106  1404  Type IV secretory pathway VirD4 protein-like protein  YP_001415158  hitchhiker  0.00639777  decreased coverage  0.000749046  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0293  CDS  NC_009720  298401  301652  3252  translation initiation factor IF-2  YP_001415208  normal  decreased coverage  0.00928073  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0294  CDS  NC_009720  301649  302368  720  hypothetical protein  YP_001415209  normal  0.211719  decreased coverage  0.00732343  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0557  CDS  NC_009720  629588  630964  1377  transposase IS4 family protein  YP_001415470  decreased coverage  0.000649319  normal  0.755449  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0558  CDS  NC_009720  631339  632484  1146  hypothetical protein  YP_001415471  decreased coverage  3.45423e-05  normal  0.710395  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_0815  CDS  NC_009720  910718  911803  1086  hypothetical protein  YP_001415723  decreased coverage  0.000167187  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1078  CDS  NC_009720  1237824  1240517  2694  molybdopterin oxidoreductase  YP_001415985  decreased coverage  3.48039e-05  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1688  CDS  NC_009720  1901796  1902044  249  30S ribosomal protein S17  YP_001416590  decreased coverage  8.88762e-09  hitchhiker  3.86563e-09  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1796  CDS  NC_009720  2025220  2026542  1323  formylmethanofuran dehydrogenase  YP_001416698  decreased coverage  0.00519016  normal  0.685943  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1932  CDS  NC_009720  2187928  2188290  363  50S ribosomal protein L20  YP_001416834  decreased coverage  0.00425676  normal  0.0301455  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1944  CDS  NC_009720  2200522  2201226  705  TetR family transcriptional regulator  YP_001416845  normal  0.358022  decreased coverage  0.0015067  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_1982  CDS  NC_009720  2239823  2240776  954  thioredoxin  YP_001416883  decreased coverage  0.00653306  normal  0.106397  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2069  CDS  NC_009720  2327927  2328691  765  two component Fis family transcriptional regulator  YP_001416970  decreased coverage  0.00351311  normal  0.27354  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2175  CDS  NC_009720  2436621  2437373  753  Ni/Fe-hydrogenase, b-type cytochrome subunit  YP_001417076  decreased coverage  0.000847396  normal  0.136379  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2232  CDS  NC_009720  2493413  2494282  870  SNase-like nuclease  YP_001417133  normal  decreased coverage  0.00607458  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2238  CDS  NC_009720  2498710  2499372  663  hypothetical protein  YP_001417138  normal  0.349608  decreased coverage  0.00515312  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2244  CDS  NC_009720  2504430  2506034  1605  nuclease  YP_001417144  decreased coverage  0.000544674  normal  0.0168792  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2256  CDS  NC_009720  2516456  2517037  582  hypothetical protein  YP_001417156  decreased coverage  0.00271973  hitchhiker  0.00860923  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_2469  CDS  NC_009720  2761011  2761787  777  porin  YP_001417368  normal  0.583463  decreased coverage  0.00325147  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3149  CDS  NC_009720  3499224  3499721  498  HPP family protein  YP_001418036  normal  decreased coverage  0.0075242  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3287  CDS  NC_009720  3649553  3650587  1035  cobalamin biosynthesis protein CobW  YP_001418173  decreased coverage  0.0071849  normal  0.760489  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3518  CDS  NC_009720  3919603  3920991  1389  integral membrane sensor signal transduction histidine kinase  YP_001418404  decreased coverage  0.00833469  normal  0.492052  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3582  CDS  NC_009720  4004419  4005843  1425  para-aminobenzoate synthase, subunit I  YP_001418467  decreased coverage  0.00051468  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3592  CDS  NC_009720  4016406  4017674  1269  ATP-dependent protease ATP-binding subunit ClpX  YP_001418477  decreased coverage  0.00172757  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3647  CDS  NC_009720  4065799  4066128  330  hypothetical protein  YP_001418532  decreased coverage  0.0064686  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3648  CDS  NC_009720  4066125  4067105  981  hypothetical protein  YP_001418533  decreased coverage  0.00319764  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3979  CDS  NC_009720  4405898  4406422  525  MerR family transcriptional regulator  YP_001418860  decreased coverage  0.00581953  normal  0.426596  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_3988  CDS  NC_009720  4417610  4418143  534  hypothetical protein  YP_001418868  decreased coverage  0.000484806  normal  0.214839  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4032  CDS  NC_009720  4459837  4461339  1503  amino acid permease-associated region  YP_001418911  normal  0.182943  decreased coverage  0.00720195  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4268  CDS  NC_009720  4735371  4735742  372  hypothetical protein  YP_001419146  normal  0.359077  decreased coverage  0.00834069  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4269  CDS  NC_009720  4735860  4736462  603  exopolysaccharide synthesis ExoD  YP_001419147  normal  0.528198  decreased coverage  0.0088823  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4274  CDS  NC_009720  4741372  4741866  495  TonB system transport protein ExbD type-1  YP_001419152  normal  decreased coverage  0.0093154  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4433  CDS  NC_009720  4919373  4920542  1170  1-deoxy-D-xylulose 5-phosphate reductoisomerase  YP_001419311  normal  decreased coverage  0.000780962  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4434  CDS  NC_009720  4920553  4921365  813  phosphatidate cytidylyltransferase  YP_001419312  normal  decreased coverage  0.000775882  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4435  CDS  NC_009720  4921371  4922138  768  undecaprenyl diphosphate synthase  YP_001419313  normal  decreased coverage  0.000718481  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4436  CDS  NC_009720  4922167  4922730  564  ribosome recycling factor  YP_001419314  normal  decreased coverage  0.000669828  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4437  CDS  NC_009720  4923074  4923847  774  uridylate kinase  YP_001419315  normal  decreased coverage  0.000770833  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4438  CDS  NC_009720  4923991  4924914  924  elongation factor Ts  YP_001419316  normal  decreased coverage  0.000816473  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4439  CDS  NC_009720  4925027  4926031  1005  30S ribosomal protein S2  YP_001419317  normal  decreased coverage  0.000842833  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4449  CDS  NC_009720  4941306  4942646  1341  extracellular solute-binding protein  YP_001419327  decreased coverage  0.00843107  normal  0.115126  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4572  CDS  NC_009720  5053666  5055420  1755  resolvase domain-containing protein  YP_001419450  normal  0.118151  decreased coverage  0.0082878  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_4792  CDS  NC_009717  4222  5313  1092  integrase family protein  YP_001409245  decreased coverage  0.00356022  normal  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_5057  CDS  NC_009717  278218  278769  552  hypothetical protein  YP_001409491  decreased coverage  0.00408513  normal  0.218379  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_5071  CDS  NC_009717  294816  295652  837  coenzyme A transferase  YP_001409505  decreased coverage  0.000546344  normal  0.377928  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_5072  CDS  NC_009717  295649  296638  990  coenzyme A transferase  YP_001409506  decreased coverage  0.000990125  normal  0.375198  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Xaut_R0058  tRNA  NC_009720  5053633  5053709  77  tRNA-Met    normal  0.0349408  decreased coverage  0.0094622  Xanthobacter autotrophicus Py2  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>