177 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Shewmr7_0016  CDS  NC_008322  19875  22025  2151  multifunctional fatty acid oxidation complex subunit alpha  YP_736079  decreased coverage  0.00124169  normal  0.0928746  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0019  CDS  NC_008322  24496  25953  1458  TrkH family potassium uptake protein  YP_736082  decreased coverage  0.000172617  normal  0.0765099  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0020  CDS  NC_008322  25955  26479  525  protoporphyrinogen oxidase  YP_736083  decreased coverage  6.64462e-06  normal  0.064653  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0021  CDS  NC_008322  26542  26850  309  ArsR family transcriptional regulator  YP_736084  decreased coverage  3.64753e-06  normal  0.0654899  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0055  CDS  NC_008322  66566  67297  732  response regulator receiver protein  YP_736118  decreased coverage  9.89316e-05  hitchhiker  0.000468323  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0056  CDS  NC_008322  67405  68649  1245  major facilitator transporter  YP_736119  decreased coverage  0.00977888  hitchhiker  0.000481777  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0064  CDS  NC_008322  76972  79368  2397  TonB-dependent receptor  YP_736127  decreased coverage  0.00224959  unclonable  4.16662e-05  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0188  CDS  NC_008322  215950  220167  4218  DNA-directed RNA polymerase subunit beta'  YP_736251  normal  0.0790536  decreased coverage  0.000914175  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0189  CDS  NC_008322  220347  220721  375  30S ribosomal protein S12  YP_736252  normal  0.019095  decreased coverage  0.000333311  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0190  CDS  NC_008322  220802  221272  471  30S ribosomal protein S7  YP_736253  normal  0.0202713  decreased coverage  0.000349844  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0191  CDS  NC_008322  221351  223447  2097  elongation factor G  YP_736254  normal  0.0652513  decreased coverage  0.000543209  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0192  CDS  NC_008322  223519  224703  1185  elongation factor Tu  YP_736255  decreased coverage  0.00059163  decreased coverage  0.000414976  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0193  CDS  NC_008322  225042  225353  312  30S ribosomal protein S10  YP_736256  decreased coverage  4.24599e-06  decreased coverage  0.00027939  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0194  CDS  NC_008322  225381  226019  639  50S ribosomal protein L3  YP_736257  hitchhiker  0.000648086  decreased coverage  0.00032055  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0195  CDS  NC_008322  226037  226642  606  50S ribosomal protein L4  YP_736258  hitchhiker  0.00202265  decreased coverage  0.000317476  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0196  CDS  NC_008322  226639  226944  306  50S ribosomal protein L23  YP_736259  hitchhiker  0.000848979  decreased coverage  0.000284829  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0197  CDS  NC_008322  226961  227785  825  50S ribosomal protein L2  YP_736260  normal  0.0317166  decreased coverage  0.000296247  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0232  CDS  NC_008322  247999  248580  582  redoxin domain-containing protein  YP_736294  decreased coverage  5.7561e-05  normal  0.0469952  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0395  CDS  NC_008322  446931  447059  129  hypothetical protein  YP_736455  decreased coverage  7.30757e-05  normal  0.0497188  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0407  CDS  NC_008322  463642  464127  486  ribonuclease activity regulator protein RraA  YP_736467  decreased coverage  0.000143495  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0430  CDS  NC_008322  489220  490941  1722  NACHT family-like NTPase  YP_736490  decreased coverage  0.00169219  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0449  CDS  NC_008322  511697  512167  471  hypothetical protein  YP_736509  decreased coverage  0.00108597  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0473  CDS  NC_008322  538010  538534  525  methylation site containing protein  YP_736533  decreased coverage  5.13166e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0596  CDS  NC_008322  698969  699145  177  hypothetical protein  YP_736656  decreased coverage  0.00061714  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0635  CDS  NC_008322  742292  744454  2163  TonB-dependent receptor  YP_736695  decreased coverage  0.00167095  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0733  CDS  NC_008322  841813  842391  579  hypothetical protein  YP_736790  decreased coverage  7.10543e-06  normal  0.119791  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0751  CDS  NC_008322  856866  857834  969  hypothetical protein  YP_736808  decreased coverage  2.82854e-05  normal  0.0187498  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0752  CDS  NC_008322  857879  858574  696  hypothetical protein  YP_736809  decreased coverage  1.04845e-05  normal  0.017498  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0762  CDS  NC_008322  869804  870868  1065  outer membrane porin, putative  YP_736819  decreased coverage  4.57647e-05  unclonable  2.46582e-05  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0795  CDS  NC_008322  907442  908086  645  outer membrane lipoprotein LolB  YP_736852  decreased coverage  0.000501463  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0828  CDS  NC_008322  939902  941818  1917  peptidase U32  YP_736884  decreased coverage  0.00452719  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0881  CDS  NC_008322  1004556  1005470  915  ErfK/YbiS/YcfS/YnhG family protein  YP_736937  decreased coverage  3.8242e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0884  CDS  NC_008322  1010299  1012023  1725  potassium/proton antiporter  YP_736940  decreased coverage  0.00781318  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0889  CDS  NC_008322  1016195  1016584  390  hypothetical protein  YP_736945  decreased coverage  0.00238786  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0973  CDS  NC_008322  1119631  1121682  2052  TonB-dependent receptor  YP_737029  decreased coverage  0.00145441  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_0974  CDS  NC_008322  1122086  1123420  1335  Na(+)-translocating NADH-quinone reductase subunit A  YP_737030  decreased coverage  0.000147177  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1001  CDS  NC_008322  1156304  1156921  618  peptidylprolyl isomerase, FKBP-type  YP_737057  decreased coverage  1.02851e-05  normal  0.963071  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1042  CDS  NC_008322  1206546  1207538  993  hypothetical protein  YP_737098  normal  decreased coverage  0.00168433  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1043  CDS  NC_008322  1207946  1208245  300  hypothetical protein  YP_737099  normal  decreased coverage  0.00136952  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1044  CDS  NC_008322  1208307  1210481  2175  TonB-dependent siderophore receptor  YP_737100  normal  decreased coverage  0.00225756  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1087  CDS  NC_008322  1253412  1254194  783  triosephosphate isomerase  YP_737143  decreased coverage  0.00059681  normal  0.0654899  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1088  CDS  NC_008322  1254196  1254528  333  preprotein translocase subunit SecG  YP_737144  decreased coverage  0.000151095  normal  0.0584009  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1096  CDS  NC_008322  1263809  1265908  2100  polynucleotide phosphorylase/polyadenylase  YP_737152  decreased coverage  0.0013386  hitchhiker  0.00237644  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1097  CDS  NC_008322  1266100  1267002  903  lipoprotein NlpI  YP_737153  decreased coverage  0.00121066  hitchhiker  0.000284829  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1129  CDS  NC_008322  1312115  1313473  1359  nucleoside recognition domain-containing protein  YP_737185  decreased coverage  0.00523822  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1130  CDS  NC_008322  1313463  1313660  198  hypothetical protein  YP_737186  decreased coverage  0.000762114  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1143  CDS  NC_008322  1325910  1326338  429  OsmC family protein  YP_737199  decreased coverage  5.23467e-06  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1150  CDS  NC_008322  1337335  1338456  1122  RND family efflux transporter MFP subunit  YP_737206  decreased coverage  3.35121e-05  normal  0.257402  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1164  CDS  NC_008322  1355381  1356484  1104  GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_737220  decreased coverage  0.00615809  normal  0.131368  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1184  CDS  NC_008322  1384031  1384969  939  nucleoside triphosphate pyrophosphohydrolase  YP_737240  decreased coverage  0.00986477  normal  0.927661  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1185  CDS  NC_008322  1385086  1386726  1641  CTP synthetase  YP_737241  decreased coverage  0.000285694  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1204  CDS  NC_008322  1410427  1411116  690  cytochrome B561  YP_737260  decreased coverage  1.44641e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1253  CDS  NC_008322  1461866  1462192  327  hypothetical protein  YP_737309  decreased coverage  7.38025e-06  normal  0.482824  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1271  CDS  NC_008322  1478582  1478911  330  translation initiation factor Sui1  YP_737327  decreased coverage  4.28708e-06  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1272  CDS  NC_008322  1479061  1479375  315  hypothetical protein  YP_737328  decreased coverage  4.28708e-06  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1276  CDS  NC_008322  1481850  1482677  828  MscS mechanosensitive ion channel  YP_737332  decreased coverage  1.88457e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1277  CDS  NC_008322  1482709  1483284  576  OmpA/MotB domain-containing protein  YP_737333  decreased coverage  8.82937e-06  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1287  CDS  NC_008322  1493505  1493714  210  hypothetical protein  YP_737343  decreased coverage  3.61256e-06  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1310  CDS  NC_008322  1523348  1524904  1557  cytochrome bd ubiquinol oxidase, subunit I  YP_737366  decreased coverage  0.0091188  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1313  CDS  NC_008322  1526712  1528715  2004  methyl-accepting chemotaxis sensory transducer  YP_737369  decreased coverage  0.00146838  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1314  CDS  NC_008322  1528973  1529218  246  hypothetical protein  YP_737370  decreased coverage  2.6782e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1380  CDS  NC_008322  1595622  1597091  1470  amino acid/peptide transporter  YP_737436  decreased coverage  0.00016017  normal  0.180173  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1384  CDS  NC_008322  1602091  1603065  975  lipopolysaccharide biosynthesis  YP_737440  normal  decreased coverage  0.00868672  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1385  CDS  NC_008322  1603394  1604407  1014  polysaccharide biosynthesis protein CapD  YP_737441  normal  decreased coverage  0.00862014  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1386  CDS  NC_008322  1604416  1605579  1164  DegT/DnrJ/EryC1/StrS aminotransferase  YP_737442  normal  decreased coverage  0.00903713  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1387  CDS  NC_008322  1605580  1606269  690  acylneuraminate cytidylyltransferase  YP_737443  normal  decreased coverage  0.00882869  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1513  CDS  NC_008322  1764673  1765485  813  exonuclease III  YP_737568  decreased coverage  0.00343054  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1516  CDS  NC_008322  1766491  1767528  1038  ferric iron reductase  YP_737571  decreased coverage  0.00751668  normal  0.821381  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1604  CDS  NC_008322  1885136  1885894  759  hypothetical protein  YP_737659  decreased coverage  0.000904205  normal  0.365296  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1605  CDS  NC_008322  1885894  1886433  540  hypothetical protein  YP_737660  decreased coverage  0.00208502  normal  0.345645  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1648  CDS  NC_008322  1938316  1938648  333  glutaredoxin-like protein  YP_737700  decreased coverage  4.32966e-06  hitchhiker  0.000256673  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1678  CDS  NC_008322  1979338  1980456  1119  tRNA-specific 2-thiouridylase MnmA  YP_737729  decreased coverage  0.00625352  normal  0.128723  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1706  CDS  NC_008322  2013972  2014367  396  succinate dehydrogenase subunit C  YP_737756  decreased coverage  0.000208807  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1712  CDS  NC_008322  2021592  2022758  1167  succinyl-CoA synthetase subunit beta  YP_737762  decreased coverage  0.00288074  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1730  CDS  NC_008322  2036213  2038243  2031  methionyl-tRNA synthetase  YP_737780  decreased coverage  0.000858186  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1732  CDS  NC_008322  2039531  2040169  639  uridine kinase  YP_737782  decreased coverage  0.000414727  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1750  CDS  NC_008322  2059888  2060106  219  hypothetical protein  YP_737800  decreased coverage  1.94255e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1751  CDS  NC_008322  2060442  2062484  2043  hypothetical protein  YP_737801  decreased coverage  0.00124169  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1817  CDS  NC_008322  2140446  2141267  822  serine O-acetyltransferase  YP_737866  decreased coverage  0.000171245  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1826  CDS  NC_008322  2148069  2148266  198  hypothetical protein  YP_737875  decreased coverage  0.000390738  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1910  CDS  NC_008322  2255623  2256204  582  electron transport complex protein RnfB  YP_737956  decreased coverage  1.53045e-05  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1918  CDS  NC_008322  2266139  2266627  489  hypothetical protein  YP_737964  decreased coverage  0.00132768  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1924  CDS  NC_008322  2271601  2273463  1863  peptidyl-dipeptidase A  YP_737970  decreased coverage  0.000467858  normal  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1933  CDS  NC_008322  2284298  2285638  1341  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_737979  decreased coverage  0.00212901  normal  0.0779588  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1946  CDS  NC_008322  2297358  2298392  1035  succinylglutamate desuccinylase  YP_737992  normal  decreased coverage  0.000247019  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1947  CDS  NC_008322  2298555  2299733  1179  3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)  YP_737993  normal  decreased coverage  0.00027939  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1948  CDS  NC_008322  2299737  2300714  978  transketolase, central region  YP_737994  normal  0.858675  decreased coverage  0.000302013  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1949  CDS  NC_008322  2300724  2302319  1596  dihydrolipoamide acetyltransferase  YP_737995  normal  0.940274  decreased coverage  0.000367008  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1970  CDS  NC_008322  2323506  2323991  486  hypothetical protein  YP_738016  decreased coverage  5.08823e-06  hitchhiker  0.00854934  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1980  CDS  NC_008322  2339861  2340928  1068  arabinan endo-1,5-alpha-L-arabinosidase  YP_738026  decreased coverage  5.32018e-05  hitchhiker  0.000349844  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_1997  CDS  NC_008322  2361333  2363006  1674  ribulokinase  YP_738043  decreased coverage  0.00226612  unclonable  2.85081e-05  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2009  CDS  NC_008322  2370574  2371860  1287  seryl-tRNA synthetase  YP_738055  decreased coverage  0.000634653  hitchhiker  0.000399612  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2010  CDS  NC_008322  2371879  2372253  375  camphor resistance protein CrcB  YP_738056  decreased coverage  3.69188e-05  hitchhiker  0.000296247  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2014  CDS  NC_008322  2377339  2377845  507  leucine-responsive transcriptional regulator  YP_738060  decreased coverage  5.13166e-05  normal  0.0218506  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2015  CDS  NC_008322  2378026  2379141  1116  L-alanine dehydrogenase  YP_738061  decreased coverage  6.41536e-05  normal  0.0233457  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2016  CDS  NC_008322  2379189  2379374  186  hypothetical protein  YP_738062  decreased coverage  2.06782e-05  normal  0.0192826  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2017  CDS  NC_008322  2379672  2380625  954  thioredoxin reductase  YP_738063  decreased coverage  0.000213161  normal  0.0579886  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2022  CDS  NC_008322  2384188  2384571  384  hypothetical protein  YP_738068  decreased coverage  2.63083e-05  normal  0.117639  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2069  CDS  NC_008322  2440513  2442357  1845  signal peptide peptidase SppA, 67K type  YP_738114  decreased coverage  0.000747082  hitchhiker  0.00035323  Shewanella sp. MR-7  Bacteria 
 
 
-
 
Shewmr7_2074  CDS  NC_008322  2445465  2446145  681  two component transcriptional regulator  YP_738119  decreased coverage  0.00164535  hitchhiker  0.00140528  Shewanella sp. MR-7  Bacteria 
 
 
-
 
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