163 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Shewmr4_0021  CDS  NC_008321  25794  27251  1458  TrkH family potassium uptake protein  YP_732160  decreased coverage  1.91681e-06  hitchhiker  0.00118285  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0022  CDS  NC_008321  27253  27777  525  protoporphyrinogen oxidase  YP_732161  decreased coverage  5.30188e-08  hitchhiker  0.000763246  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0039  CDS  NC_008321  41625  42173  549  carbonic anhydrase  YP_732178  decreased coverage  7.2443e-07  hitchhiker  0.000629469  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0056  CDS  NC_008321  65316  66989  1674  signal transduction histidine kinase, LytS  YP_732194  normal  0.0698199  decreased coverage  1.26428e-07  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0057  CDS  NC_008321  66983  67714  732  response regulator receiver protein  YP_732195  decreased coverage  4.8418e-06  decreased coverage  6.48872e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0058  CDS  NC_008321  67822  69066  1245  major facilitator transporter  YP_732196  decreased coverage  0.000719685  decreased coverage  7.8318e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0059  CDS  NC_008321  69156  69776  621  hypothetical protein  YP_732197  normal  0.0155929  decreased coverage  5.2316e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0060  CDS  NC_008321  70202  70939  738  hypothetical protein  YP_732198  normal  0.128142  decreased coverage  5.46938e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0061  CDS  NC_008321  71040  71519  480  NLP/P60 protein  YP_732199  normal  decreased coverage  4.1841e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0062  CDS  NC_008321  71544  72992  1449  major facilitator transporter  YP_732200  normal  decreased coverage  6.90762e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0064  CDS  NC_008321  74168  75652  1485  sucrose phosphorylase  YP_732202  normal  decreased coverage  7.22293e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0065  CDS  NC_008321  75909  77129  1221  major facilitator transporter  YP_732203  normal  0.596651  decreased coverage  7.29069e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0125  CDS  NC_008321  139356  142166  2811  peptidase M6, immune inhibitor A  YP_732263  hitchhiker  3.37002e-05  decreased coverage  2.28409e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0156  CDS  NC_008321  177691  179793  2103  general secretion pathway protein D  YP_732294  decreased coverage  0.00486082  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0253  CDS  NC_008321  272561  273052  492  protein of unknown function, Spy-related  YP_732391  decreased coverage  2.05349e-05  hitchhiker  0.000372635  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0399  CDS  NC_008321  445757  446062  306  DNA-binding protein Fis  YP_732536  decreased coverage  5.48322e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0430  CDS  NC_008321  480269  481696  1428  dihydrolipoamide dehydrogenase  YP_732567  decreased coverage  1.1549e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0595  CDS  NC_008321  687264  688652  1389  N-acetylmuramoyl-L-alanine amidase  YP_732732  decreased coverage  9.55274e-07  hitchhiker  1.40637e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0596  CDS  NC_008321  688666  690600  1935  DNA mismatch repair protein  YP_732733  normal  0.0279132  decreased coverage  1.83924e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0603  CDS  NC_008321  696256  697470  1215  cytochrome b/b6 domain-containing protein  YP_732740  decreased coverage  1.03095e-05  normal  0.0561448  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0631  CDS  NC_008321  730125  730826  702  hypothetical protein  YP_732768  decreased coverage  1.2648e-07  normal  0.149121  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0641  CDS  NC_008321  746233  747141  909  hypothetical protein  YP_732778  normal  decreased coverage  2.81394e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0649  CDS  NC_008321  754798  755790  993  fructose-1,6-bisphosphatase  YP_732786  decreased coverage  1.2106e-05  normal  0.0500569  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0650  CDS  NC_008321  756086  758377  2292  dipeptidyl-peptidase IV  YP_732787  decreased coverage  0.00104928  normal  0.120893  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0692  CDS  NC_008321  799557  800162  606  hypothetical protein  YP_732829  decreased coverage  3.45273e-06  normal  0.666966  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0693  CDS  NC_008321  800343  801500  1158  hypothetical protein  YP_732830  decreased coverage  2.26756e-05  normal  0.897132  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0694  CDS  NC_008321  801850  802647  798  Beta-lactamase  YP_732831  decreased coverage  5.96311e-06  normal  0.535938  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0697  CDS  NC_008321  808736  810184  1449  diguanylate cyclase  YP_732834  decreased coverage  1.40018e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0721  CDS  NC_008321  840521  842029  1509  curlin-associated protein  YP_732858  decreased coverage  0.000376706  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0817  CDS  NC_008321  951534  952688  1155  23S rRNA methyluridine methyltransferase  YP_732954  normal  decreased coverage  5.20531e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0818  CDS  NC_008321  952703  953932  1230  periplasmic sensor signal transduction histidine kinase  YP_732955  normal  decreased coverage  6.01412e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0819  CDS  NC_008321  953944  954660  717  two component transcriptional regulator  YP_732956  normal  0.309816  decreased coverage  4.1871e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0822  CDS  NC_008321  956202  961319  5118  cell wall anchor domain-containing protein  YP_732959  normal  0.658117  decreased coverage  1.60097e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0894  CDS  NC_008321  1045662  1046657  996  trans-hexaprenyltranstransferase  YP_733031  decreased coverage  2.38398e-07  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0908  CDS  NC_008321  1058236  1060533  2298  organic solvent tolerance protein  YP_733045  decreased coverage  6.25202e-05  normal  0.177324  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0935  CDS  NC_008321  1091557  1093608  2052  TonB-dependent receptor  YP_733072  decreased coverage  0.000201333  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_0963  CDS  NC_008321  1127138  1127755  618  peptidylprolyl isomerase, FKBP-type  YP_733100  decreased coverage  4.63781e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1022  CDS  NC_008321  1191051  1191833  783  triosephosphate isomerase  YP_733159  decreased coverage  1.78614e-07  hitchhiker  0.000431545  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1070  CDS  NC_008321  1252518  1253336  819  extracellular solute-binding protein  YP_733207  decreased coverage  1.62274e-07  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1098  CDS  NC_008321  1289553  1290656  1104  3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II  YP_733235  decreased coverage  0.000498097  normal  0.638358  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1099  CDS  NC_008321  1290797  1291273  477  6,7-dimethyl-8-ribityllumazine synthase  YP_733236  decreased coverage  3.68267e-07  normal  0.587736  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1100  CDS  NC_008321  1291288  1291692  405  transcription antitermination protein NusB  YP_733237  decreased coverage  5.96608e-05  normal  0.728168  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1113  CDS  NC_008321  1307669  1308547  879  nucleoside triphosphate pyrophosphohydrolase  YP_733250  decreased coverage  1.83867e-07  normal  0.882803  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1129  CDS  NC_008321  1327046  1327243  198  carbon storage regulator  YP_733266  decreased coverage  1.02923e-08  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1133  CDS  NC_008321  1334007  1334696  690  cytochrome B561  YP_733270  decreased coverage  4.90304e-08  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1134  CDS  NC_008321  1334762  1335211  450  cytochrome c, class II  YP_733271  decreased coverage  2.45313e-08  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1181  CDS  NC_008321  1384634  1385350  717  tRNA (guanine-N(7)-)-methyltransferase  YP_733318  decreased coverage  1.07367e-07  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1182  CDS  NC_008321  1385396  1385722  327  hypothetical protein  YP_733319  decreased coverage  2.92062e-08  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1328  CDS  NC_008321  1538822  1540240  1419  mannose-1-phosphate guanylyltransferase (GDP)  YP_733464  normal  0.358027  decreased coverage  0.000505656  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1329  CDS  NC_008321  1540244  1541662  1419  phosphoglucomutase/phosphomannomutase alpha/beta/subunit  YP_733465  normal  0.117788  decreased coverage  0.000167775  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1330  CDS  NC_008321  1541694  1542860  1167  UDP-glucose 6-dehydrogenase  YP_733466  normal  0.143594  decreased coverage  0.000414466  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1331  CDS  NC_008321  1543063  1544136  1074  undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase  YP_733467  normal  decreased coverage  0.000372635  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1332  CDS  NC_008321  1544281  1545342  1062  undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase  YP_733468  normal  0.157987  decreased coverage  0.000128778  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1352  CDS  NC_008321  1567733  1568482  750  electron transfer flavoprotein beta-subunit  YP_733487  decreased coverage  0.00189671  hitchhiker  0.00845091  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1383  CDS  NC_008321  1610676  1611008  333  preprotein translocase subunit YajC  YP_733518  decreased coverage  3.13492e-06  hitchhiker  7.20992e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1424  CDS  NC_008321  1662835  1663851  1017  aspartate semialdehyde dehydrogenase  YP_733559  decreased coverage  3.00384e-07  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1469  CDS  NC_008321  1717553  1720036  2484  hypothetical protein  YP_733604  decreased coverage  8.92624e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1507  CDS  NC_008321  1772630  1773670  1041  cell division protein ZipA  YP_733642  unclonable  1.82258e-08  decreased coverage  6.92006e-10  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1522  CDS  NC_008321  1789919  1790470  552  D,D-heptose 1,7-bisphosphate phosphatase  YP_733657  decreased coverage  4.62604e-08  normal  0.517772  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1548  CDS  NC_008321  1827991  1829820  1830  excinuclease ABC subunit C  YP_733683  decreased coverage  7.04584e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1592  CDS  NC_008321  1881795  1884164  2370  phosphoenolpyruvate synthase  YP_733726  decreased coverage  4.71516e-05  normal  0.38574  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1603  CDS  NC_008321  1898292  1899410  1119  tRNA-specific 2-thiouridylase MnmA  YP_733737  decreased coverage  4.1777e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1631  CDS  NC_008321  1932919  1933314  396  succinate dehydrogenase subunit C  YP_733764  decreased coverage  7.02193e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1672  CDS  NC_008321  1973053  1973697  645  putative solute/DNA competence effector  YP_733805  decreased coverage  3.66609e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1673  CDS  NC_008321  1973726  1975777  2052  carboxy-terminal protease  YP_733806  decreased coverage  0.00274964  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1716  CDS  NC_008321  2035554  2038751  3198  ATPase-like protein  YP_733848  normal  decreased coverage  0.00601254  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1718  CDS  NC_008321  2039666  2040511  846  hypothetical protein  YP_733850  normal  decreased coverage  0.0021486  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1825  CDS  NC_008321  2164970  2166316  1347  hypothetical protein  YP_733956  decreased coverage  0.000297573  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1852  CDS  NC_008321  2200290  2201360  1071  iron-containing alcohol dehydrogenase  YP_733983  decreased coverage  3.18302e-06  hitchhiker  1.2761e-07  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1853  CDS  NC_008321  2201380  2202567  1188  DegT/DnrJ/EryC1/StrS aminotransferase  YP_733984  hitchhiker  3.12103e-05  decreased coverage  1.38653e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1854  CDS  NC_008321  2202957  2203562  606  carbonate dehydratase  YP_733985  hitchhiker  0.00119541  decreased coverage  9.69176e-10  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1855  CDS  NC_008321  2203716  2204546  831  alpha/beta hydrolase fold  YP_733986  normal  0.121487  decreased coverage  1.12067e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1919  CDS  NC_008321  2286682  2289522  2841  DNA gyrase subunit A  YP_734050  decreased coverage  0.000233211  hitchhiker  2.96006e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1995  CDS  NC_008321  2373911  2374978  1068  arabinan endo-1,5-alpha-L-arabinosidase  YP_734125  decreased coverage  2.6265e-07  hitchhiker  9.68585e-05  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_1999  CDS  NC_008321  2381573  2384938  3366  glycoside hydrolase family protein  YP_734129  unclonable  0.000101187  decreased coverage  1.70847e-08  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2000  CDS  NC_008321  2385038  2385889  852  hypothetical protein  YP_734130  hitchhiker  0.00389336  decreased coverage  3.77823e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2005  CDS  NC_008321  2390837  2391322  486  hypothetical protein  YP_734135  decreased coverage  0.00021351  hitchhiker  1.41582e-07  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2011  CDS  NC_008321  2395378  2397789  2412  heavy metal translocating P-type ATPase  YP_734141  normal  decreased coverage  9.54051e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2012  CDS  NC_008321  2397810  2398010  201  cytochrome oxidase maturation protein, cbb3-type  YP_734142  normal  decreased coverage  2.91515e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2013  CDS  NC_008321  2398019  2398711  693  hypothetical protein  YP_734143  normal  decreased coverage  3.81426e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2014  CDS  NC_008321  2398767  2399519  753  fumarate/nitrate reduction transcriptional regulator  YP_734144  normal  decreased coverage  4.22436e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2015  CDS  NC_008321  2399662  2400594  933  universal stress protein UspE  YP_734145  normal  decreased coverage  4.55059e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2016  CDS  NC_008321  2400672  2401640  969  C32 tRNA thiolase  YP_734146  normal  decreased coverage  4.99451e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2022  CDS  NC_008321  2408270  2409160  891  hypothetical protein  YP_734152  decreased coverage  2.38398e-07  hitchhiker  2.13318e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2023  CDS  NC_008321  2409373  2410383  1011  glyceraldehyde-3-phosphate dehydrogenase  YP_734153  decreased coverage  3.15203e-07  hitchhiker  2.31393e-06  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2050  CDS  NC_008321  2440623  2441261  639  TetR family transcriptional regulator  YP_734180  decreased coverage  0.00274298  normal  0.196014  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2128  CDS  NC_008321  2540089  2541489  1401  asparaginyl-tRNA synthetase  YP_734258  decreased coverage  1.32176e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2146  CDS  NC_008321  2566749  2569196  2448  acyl-CoA dehydrogenase  YP_734276  decreased coverage  0.000466188  normal  0.548318  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2222  CDS  NC_008321  2654286  2655224  939  diguanylate cyclase  YP_734352  decreased coverage  0.0027044  normal  0.320993  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2238  CDS  NC_008321  2676245  2677228  984  fimbrial protein  YP_734367  normal  0.160036  decreased coverage  0.00460081  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2239    NC_008321  2677618  2678197  580      normal  0.316457  decreased coverage  0.00924538  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2268  CDS  NC_008321  2713339  2713827  489  peptidylprolyl isomerase, FKBP-type  YP_734396  decreased coverage  0.000395239  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2290  CDS  NC_008321  2731482  2732396  915  LysR family transcriptional regulator  YP_734418  decreased coverage  6.11943e-06  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2302  CDS  NC_008321  2748563  2750791  2229  peptidyl-dipeptidase Dcp  YP_734430  decreased coverage  2.26304e-05  normal  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2335  CDS  NC_008321  2784242  2784682  441  GCN5-related N-acetyltransferase  YP_734463  decreased coverage  0.00213178  normal  0.015977  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2340  CDS  NC_008321  2791034  2791918  885  dihydrodipicolinate synthase  YP_734468  decreased coverage  0.00299163  hitchhiker  5.59319e-07  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2345  CDS  NC_008321  2795066  2796166  1101  hypothetical protein  YP_734473  normal  decreased coverage  9.97744e-10  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2346  CDS  NC_008321  2796375  2796608  234  SirA family protein  YP_734474  normal  0.416048  decreased coverage  4.87815e-10  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2347  CDS  NC_008321  2796721  2798190  1470  peptidase M48, Ste24p  YP_734475  normal  0.300143  decreased coverage  1.08832e-09  Shewanella sp. MR-4  Bacteria 
 
 
-
 
Shewmr4_2348  CDS  NC_008321  2798314  2798664  351  arsenate reductase  YP_734476  normal  0.0983471  decreased coverage  3.90856e-10  Shewanella sp. MR-4  Bacteria 
 
 
-
 
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