60 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dd703_0021  CDS  NC_012880  26097  26825  729  hypothetical protein  YP_002985662  decreased coverage  0.00866828  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0116  CDS  NC_012880  134212  134904  693  L-ribulose-5-phosphate 4-epimerase  YP_002985757  decreased coverage  0.00979239  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0399  CDS  NC_012880  445406  445876  471  30S ribosomal protein S7  YP_002986034  decreased coverage  5.0235e-06  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0400  CDS  NC_012880  445969  448083  2115  elongation factor G  YP_002986035  decreased coverage  0.000255179  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0401  CDS  NC_012880  448155  449339  1185  elongation factor Tu  YP_002986036  decreased coverage  2.73455e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0416  CDS  NC_012880  456018  456332  315  50S ribosomal protein L24  YP_002986051  decreased coverage  0.000325696  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0417  CDS  NC_012880  456347  456886  540  ribosomal protein L5  YP_002986052  decreased coverage  0.000637588  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0418  CDS  NC_012880  456899  457204  306  30S ribosomal protein S14  YP_002986053  decreased coverage  0.000405009  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_0419  CDS  NC_012880  457238  457630  393  30S ribosomal protein S8  YP_002986054  decreased coverage  0.000465732  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0446  CDS  NC_012880  474874  475410  537  putative transferase  YP_002986080  decreased coverage  3.1956e-06  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0533  CDS  NC_012880  595768  597657  1890  DNA mismatch repair protein  YP_002986166  decreased coverage  0.000857622  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0535  CDS  NC_012880  598703  599002  300  RNA-binding protein Hfq  YP_002986168  decreased coverage  2.82638e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_0562  CDS  NC_012880  629861  631573  1713  methyl-accepting chemotaxis sensory transducer  YP_002986195  decreased coverage  0.00821394  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0585  CDS  NC_012880  658757  659020  264  30S ribosomal protein S20  YP_002986218  decreased coverage  0.000109999  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0653  CDS  NC_012880  736427  737578  1152  cell division protein FtsZ  YP_002986286  decreased coverage  2.29e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_0812  CDS  NC_012880  920679  921566  888  hypothetical protein  YP_002986445  decreased coverage  0.000269148  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0829  CDS  NC_012880  939448  940266  819  undecaprenyl pyrophosphate phosphatase  YP_002986461  decreased coverage  0.00333186  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_0848  CDS  NC_012880  966791  968119  1329  23S rRNA 5-methyluridine methyltransferase  YP_002986480  decreased coverage  0.000210259  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_0878  CDS  NC_012880  1000638  1001669  1032  D-methionine ABC transporter, ATPase subunit  YP_002986510  decreased coverage  0.000103335  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0879  CDS  NC_012880  1001851  1002417  567  D,D-heptose 1,7-bisphosphate phosphatase  YP_002986511  decreased coverage  7.38247e-06  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_0888  CDS  NC_012880  1016980  1018029  1050  putative methyltransferase  YP_002986518  decreased coverage  0.00286153  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1124  CDS  NC_012880  1287530  1287958  429  protein of unknown function DUF6 transmembrane  YP_002986751  decreased coverage  0.00709741  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1508  CDS  NC_012880  1791729  1792079  351  transcriptional activator FlhD  YP_002987130  decreased coverage  0.00168962  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1509  CDS  NC_012880  1792079  1792660  582  transcriptional activator FlhC  YP_002987131  decreased coverage  0.0026614  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1579  CDS  NC_012880  1865765  1868947  3183  ribonuclease, Rne/Rng family  YP_002987200  decreased coverage  0.00521114  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1637  CDS  NC_012880  1927966  1929057  1092  porin Gram-negative type  YP_002987256  decreased coverage  0.000904946  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1701  CDS  NC_012880  2023554  2023859  306  protein of unknown function DUF1049  YP_002987320  decreased coverage  4.46702e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1712  CDS  NC_012880  2037722  2038618  897  transcriptional regulator, LysR family  YP_002987331  decreased coverage  0.00729088  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_1720  CDS  NC_012880  2047211  2048401  1191  cobalamin synthesis protein P47K  YP_002987339  decreased coverage  0.00319553  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1801  CDS  NC_012880  2145441  2146445  1005  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_002987419  decreased coverage  0.00628177  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_1803  CDS  NC_012880  2147467  2148966  1500  extracellular solute-binding protein family 5  YP_002987421  decreased coverage  0.0045678  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2043  CDS  NC_012880  2423319  2423531  213  hypothetical protein  YP_002987654  decreased coverage  0.000386575  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2044  CDS  NC_012880  2423492  2424313  822  NAD synthetase  YP_002987655  decreased coverage  0.00162701  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2089  CDS  NC_012880  2475048  2475515  468  P2 phage tail completion R family protein  YP_002987698  decreased coverage  0.00742517  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2107  CDS  NC_012880  2490854  2492707  1854  diguanylate cyclase with PAS/PAC and GAF sensors  YP_002987716  decreased coverage  0.00105125  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2114  CDS  NC_012880  2497630  2498103  474  OsmC family protein  YP_002987723  decreased coverage  0.0029587  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2237  CDS  NC_012880  2630651  2632324  1674  30S ribosomal protein S1  YP_002987846  decreased coverage  0.000585516  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2262  CDS  NC_012880  2664317  2665276  960  thioredoxin reductase  YP_002987869  decreased coverage  0.0017275  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2316  CDS  NC_012880  2727106  2728101  996  inner-membrane translocator  YP_002987922  decreased coverage  0.00754552  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2345  CDS  NC_012880  2759800  2761050  1251  hypothetical protein  YP_002987951  decreased coverage  0.00333992  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2346  CDS  NC_012880  2761050  2762225  1176  hypothetical protein  YP_002987952  decreased coverage  0.000237272  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_2439  CDS  NC_012880  2859090  2859773  684  dethiobiotin synthase  YP_002988043  decreased coverage  0.00602737  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_2521  CDS  NC_012880  2961001  2961741  741  glutamine amidotransferase  YP_002988120  decreased coverage  0.00189035  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2522  CDS  NC_012880  2961801  2962280  480  hypothetical protein  YP_002988121  decreased coverage  0.00100705  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_2755  CDS  NC_012880  3215839  3216966  1128  ABC transporter, substrate binding protein  YP_002988354  decreased coverage  1.38231e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2790  CDS  NC_012880  3259349  3260002  654  anti-RNA polymerase sigma factor SigE  YP_002988389  decreased coverage  0.00342935  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2821  CDS  NC_012880  3298056  3299405  1350  poly(A) polymerase I  YP_002988420  decreased coverage  0.00527466  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2848  CDS  NC_012880  3325323  3327896  2574  protein disaggregation chaperone  YP_002988445  decreased coverage  0.000767597  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2969  CDS  NC_012880  3460251  3460706  456  beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ  YP_002988566  decreased coverage  0.000324792  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_2970  CDS  NC_012880  3460856  3461878  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_002988567  decreased coverage  0.000180027  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_2971  CDS  NC_012880  3461882  3462379  498  outer membrane chaperone Skp (OmpH)  YP_002988568  decreased coverage  6.28638e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_3215  CDS  NC_012880  3767627  3768865  1239  manganese transport protein MntH  YP_002988800  decreased coverage  0.00440614  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_3331  CDS  NC_012880  3900866  3902089  1224  phosphopentomutase  YP_002988915  decreased coverage  0.00236172  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_3445  CDS  NC_012880  4013233  4015623  2391  heavy metal translocating P-type ATPase  YP_002989027  decreased coverage  0.00827087  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_3534  CDS  NC_012880  4107678  4108211  534  hypothetical protein  YP_002989114  decreased coverage  0.00335662  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_3638  CDS  NC_012880  4226078  4226470  393  ribosomal protein S9  YP_002989217  decreased coverage  0.00994207  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_3639  CDS  NC_012880  4226486  4226914  429  50S ribosomal protein L13  YP_002989218  decreased coverage  0.0081105  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
-
 
Dd703_3739  CDS  NC_012880  4334457  4335407  951  pantothenate kinase  YP_002989316  decreased coverage  6.7417e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_R0005  rRNA  NC_012880  475883  477413  1531  16S ribosomal RNA    decreased coverage  3.61753e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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Dd703_R0080  rRNA  NC_012880  4295775  4297305  1531  16S ribosomal RNA    decreased coverage  7.54087e-05  n/a    Dickeya dadantii Ech703  Bacteria 
 
 
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