84 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pecwa_0206  CDS  NC_013421  228135  228563  429  50S ribosomal protein L11  YP_003257668  decreased coverage  1.83959e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0207  CDS  NC_013421  228567  229271  705  50S ribosomal protein L1  YP_003257669  decreased coverage  2.93924e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0208  CDS  NC_013421  229589  230086  498  50S ribosomal protein L10  YP_003257670  decreased coverage  2.17712e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0209  CDS  NC_013421  230153  230518  366  ribosomal protein L7/L12  YP_003257671  decreased coverage  1.61356e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0229  CDS  NC_013421  255474  257063  1590  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase  YP_003257691  decreased coverage  0.00104453  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0263    NC_013421  295127  296246  1120      decreased coverage  0.000154526  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0298  CDS  NC_013421  329717  330868  1152  AFG1-family ATPase  YP_003257758  decreased coverage  5.65805e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0299  CDS  NC_013421  331105  331533  429  50S ribosomal protein L13  YP_003257759  decreased coverage  1.51129e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0398  CDS  NC_013421  430597  432168  1572  CRISPR-associated protein, Cse1 family  YP_003257848  decreased coverage  0.000236732  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0825  CDS  NC_013421  875411  877690  2280  TonB-dependent siderophore receptor  YP_003258251  decreased coverage  0.000404003  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0890  CDS  NC_013421  945632  946360  729  two component transcriptional regulator, winged helix family  YP_003258315  decreased coverage  0.000284562  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0891  CDS  NC_013421  946338  947837  1500  integral membrane sensor signal transduction histidine kinase  YP_003258316  decreased coverage  0.00459895  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0964  CDS  NC_013421  1036698  1037594  897  inorganic polyphosphate/ATP-NAD kinase  YP_003258388  decreased coverage  0.000412128  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_0965  CDS  NC_013421  1037725  1038312  588  heat shock protein GrpE  YP_003258389  decreased coverage  0.000249934  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1014  CDS  NC_013421  1095483  1096274  792  putative sulfate transport protein CysZ  YP_003258438  decreased coverage  5.00888e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1118  CDS  NC_013421  1206504  1207070  567  fructose-1-phosphatase  YP_003258539  decreased coverage  0.000766383  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1119  CDS  NC_013421  1207067  1207495  429  hypothetical protein  YP_003258540  decreased coverage  0.000563823  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1162  CDS  NC_013421  1252848  1254296  1449  poly(A) polymerase I  YP_003258583  decreased coverage  0.000172758  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1267  CDS  NC_013421  1381011  1382405  1395  exodeoxyribonuclease VII large subunit  YP_003258688  decreased coverage  0.000176036  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1268    NC_013421  1382441  1384043  1603      decreased coverage  0.00784305  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1317  CDS  NC_013421  1434813  1436873  2061  Beta-galactosidase  YP_003258729  decreased coverage  0.00129022  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1318  CDS  NC_013421  1436914  1438131  1218  Arabinogalactan endo-1,4-beta-galactosidase  YP_003258730  decreased coverage  0.00527191  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1480  CDS  NC_013421  1603845  1604396  552  phosphodiesterase  YP_003258886  decreased coverage  3.35097e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1481  CDS  NC_013421  1604520  1605170  651  NUDIX hydrolase  YP_003258887  decreased coverage  3.81919e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1482  CDS  NC_013421  1605256  1606116  861  protein of unknown function DUF817  YP_003258888  decreased coverage  5.81857e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1663  CDS  NC_013421  1802127  1802690  564  hypothetical protein  YP_003259060  decreased coverage  0.00975358  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1852  CDS  NC_013421  2014952  2015530  579  transcriptional activator FlhC  YP_003259240  decreased coverage  0.00303286  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1921  CDS  NC_013421  2083830  2084084  255  protein of unknown function UPF0153  YP_003259308  decreased coverage  0.00522326  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1949  CDS  NC_013421  2116596  2117801  1206  Beta-lactamase  YP_003259335  decreased coverage  9.61699e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1950  CDS  NC_013421  2117798  2118571  774  DNA-binding transcriptional repressor DeoR  YP_003259336  decreased coverage  4.3929e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_1951  CDS  NC_013421  2118603  2119271  669  deoxyribose-phosphate aldolase  YP_003259337  decreased coverage  0.000223419  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2154  CDS  NC_013421  2345091  2346197  1107  tRNA-specific 2-thiouridylase MnmA  YP_003259535  decreased coverage  0.00771219  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2158    NC_013421  2348936  2349199  264      decreased coverage  0.00988497  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2175  CDS  NC_013421  2365872  2366753  882  heat shock protein HtpX  YP_003259552  decreased coverage  5.24966e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2262  CDS  NC_013421  2451537  2451956  420  methionine sulfoxide reductase B  YP_003259639  decreased coverage  0.00190122  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2609  CDS  NC_013421  2850490  2850714  225  phage shock protein B  YP_003259972  decreased coverage  0.00720004  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2619  CDS  NC_013421  2861329  2861958  630  hypothetical protein  YP_003259982  decreased coverage  0.0035608  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2620  CDS  NC_013421  2861970  2862335  366  hypothetical protein  YP_003259983  decreased coverage  0.00649887  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2642  CDS  NC_013421  2890652  2890957  306  protein of unknown function DUF1049  YP_003260005  decreased coverage  1.64462e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2643  CDS  NC_013421  2891210  2892154  945  transcriptional regulator, DeoR family  YP_003260006  decreased coverage  4.7791e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2664  CDS  NC_013421  2915040  2916152  1113  anhydro-N-acetylmuramic acid kinase  YP_003260027  decreased coverage  0.000349769  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2665  CDS  NC_013421  2916503  2916970  468  17 kDa surface antigen  YP_003260028  decreased coverage  0.000160562  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2666  CDS  NC_013421  2917102  2917539  438  transcriptional regulator SlyA  YP_003260029  decreased coverage  0.0001523  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2708  CDS  NC_013421  2966645  2967169  525  hypothetical protein  YP_003260069  decreased coverage  0.000631521  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2709  CDS  NC_013421  2967290  2967679  390  hypothetical protein  YP_003260070  decreased coverage  0.0018864  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2844  CDS  NC_013421  3107505  3107705  201  transposase IS3/IS911 family protein  YP_003260203  decreased coverage  0.000226837  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2845  CDS  NC_013421  3107993  3108208  216  hypothetical protein  YP_003260204  decreased coverage  0.000200485  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2877  CDS  NC_013421  3137331  3137834  504  DNA starvation/stationary phase protection protein Dps  YP_003260235  decreased coverage  0.000573167  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3119  CDS  NC_013421  3397783  3399426  1644  phosphoglucomutase  YP_003260468  decreased coverage  0.000194945  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3121  CDS  NC_013421  3400362  3401141  780  hypothetical protein  YP_003260470  decreased coverage  3.31929e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3122  CDS  NC_013421  3401434  3401715  282  LexA regulated protein  YP_003260471  decreased coverage  1.18498e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3123  CDS  NC_013421  3401867  3403534  1668  methyl-accepting chemotaxis sensory transducer  YP_003260472  decreased coverage  0.000142041  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3124  CDS  NC_013421  3404423  3404950  528  flavodoxin FldA  YP_003260473  decreased coverage  3.47924e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3226  CDS  NC_013421  3520955  3523108  2154  carbon starvation protein CstA  YP_003260575  decreased coverage  0.00258818  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3234  CDS  NC_013421  3532601  3532930  330  hypothetical protein  YP_003260583  decreased coverage  9.25848e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3235  CDS  NC_013421  3532971  3535043  2073  DNA polymerase III subunits gamma and tau  YP_003260584  decreased coverage  0.00193084  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3350  CDS  NC_013421  3675033  3676055  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_003260695  decreased coverage  6.94065e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3429  CDS  NC_013421  3765246  3767312  2067  multicopper oxidase type 3  YP_003260773  decreased coverage  0.00228386  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3430  CDS  NC_013421  3767431  3768684  1254  gamma-glutamyl phosphate reductase  YP_003260774  decreased coverage  0.000815894  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3499  CDS  NC_013421  3849525  3850556  1032  DL-methionine transporter ATP-binding subunit  YP_003260842  decreased coverage  0.00014071  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3500  CDS  NC_013421  3850549  3851202  654  DL-methionine transporter permease subunit  YP_003260843  decreased coverage  7.2704e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3584  CDS  NC_013421  3954819  3955484  666  iron-sulfur cluster repair di-iron protein  YP_003260927  decreased coverage  4.56078e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3585  CDS  NC_013421  3955562  3956182  621  peptidyl-prolyl cis-trans isomerase  YP_003260928  decreased coverage  3.41451e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3694  CDS  NC_013421  4068192  4068773  582  stress protein  YP_003261036  decreased coverage  0.00340813  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3706  CDS  NC_013421  4080711  4081691  981  4-hydroxythreonine-4-phosphate dehydrogenase 2  YP_003261048  decreased coverage  5.29964e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3755  CDS  NC_013421  4147819  4148583  765  transcriptional regulator PdhR  YP_003261097  decreased coverage  0.000830263  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3775  CDS  NC_013421  4166311  4167462  1152  cell division protein FtsZ  YP_003261117  decreased coverage  8.84705e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3865  CDS  NC_013421  4269867  4270583  717  two-component response regulator  YP_003261205  decreased coverage  2.88449e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3866  CDS  NC_013421  4270641  4271123  483  hypothetical protein  YP_003261206  decreased coverage  2.48157e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3867  CDS  NC_013421  4271329  4272216  888  transcriptional regulator, AraC family  YP_003261207  decreased coverage  5.35009e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3922  CDS  NC_013421  4329901  4331529  1629  cell wall hydrolase/autolysin  YP_003261260  decreased coverage  0.00766484  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3923  CDS  NC_013421  4331526  4332008  483  putative ATPase  YP_003261261  decreased coverage  0.00130971  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3924  CDS  NC_013421  4332048  4333580  1533  hypothetical protein  YP_003261262  decreased coverage  0.00146397  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_3948  CDS  NC_013421  4363019  4364665  1647  sodium-dependent inorganic phosphate (Pi) transporter  YP_003261286  decreased coverage  0.00173095  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4149  CDS  NC_013421  4572824  4574173  1350  sn-glycerol-3-phosphate transporter  YP_003261480  decreased coverage  8.7639e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4230  CDS  NC_013421  4673464  4674003  540  protoporphyrinogen oxidase  YP_003261561  decreased coverage  0.0023265  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4231  CDS  NC_013421  4674025  4675476  1452  potassium transporter  YP_003261562  decreased coverage  0.00335322  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4392  CDS  NC_013421  4814293  4814751  459  deoxyuridine 5'-triphosphate nucleotidohydrolase  YP_003261691  decreased coverage  0.00014963  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4393  CDS  NC_013421  4814870  4815466  597  nucleoid occlusion protein  YP_003261692  decreased coverage  0.000163426  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4526  CDS  NC_013421  4967961  4968929  969  ribose ABC transporter permease protein  YP_003261823  decreased coverage  0.000584894  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_4541  CDS  NC_013421  4985332  4986132  801  F0F1 ATP synthase subunit A  YP_003261838  decreased coverage  3.89155e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_R0056  tRNA  NC_013421  3108579  3108666  88  tRNA-Ser    decreased coverage  0.000159077  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_R0072  tRNA  NC_013421  3764502  3764577  76  tRNA-Thr    decreased coverage  0.000258619  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_R0085  rRNA  NC_013421  4385113  4386643  1531  16S ribosomal RNA    decreased coverage  0.000116955  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>