75 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Lreu_0097  CDS  NC_009513  121729  123036  1308  seryl-tRNA synthetase  YP_001270706  decreased coverage  1.7376e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0098  CDS  NC_009513  123305  124768  1464  polar amino acid ABC transporter, inner membrane subunit  YP_001270707  decreased coverage  3.21849e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0116  CDS  NC_009513  142359  143501  1143  inosine-5'-monophosphate dehydrogenase  YP_001270725  decreased coverage  5.87091e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0172  CDS  NC_009513  204267  205220  954  aldo/keto reductase  YP_001270779  decreased coverage  3.55208e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0220  CDS  NC_009513  254821  256188  1368  bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase  YP_001270827  decreased coverage  1.03036e-06  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0221  CDS  NC_009513  256263  257252  990  ribose-phosphate pyrophosphokinase  YP_001270828  decreased coverage  3.42806e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0230  CDS  NC_009513  264445  266049  1605  CTP synthetase  YP_001270837  decreased coverage  1.81921e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0246  CDS  NC_009513  282268  283209  942  glutaminase  YP_001270853  decreased coverage  1.16675e-08  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0247  CDS  NC_009513  283355  283813  459  transposase IS200-family protein  YP_001270854  decreased coverage  8.37445e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0270  CDS  NC_009513  308433  309434  1002  nifR3 family TIM-barrel protein  YP_001270877  decreased coverage  1.35334e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0325  CDS  NC_009513  372252  372764  513  tRNA-adenosine deaminase  YP_001270932  decreased coverage  0.00296157  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0376  CDS  NC_009513  424915  425847  933  thioredoxin reductase  YP_001270982  decreased coverage  2.65637e-08  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0404  CDS  NC_009513  456412  457335  924  ribokinase  YP_001271010  decreased coverage  4.22627e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0447  CDS  NC_009513  500206  501627  1422  amino acid permease-associated region  YP_001271052  decreased coverage  3.29261e-08  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0459  CDS  NC_009513  514460  515233  774  YibE/F family protein  YP_001271064  decreased coverage  1.10124e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0460  CDS  NC_009513  515393  516664  1272  uracil-xanthine permease  YP_001271065  decreased coverage  1.62343e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0478  CDS  NC_009513  531685  532530  846  helix-turn-helix domain-containing protein  YP_001271083  decreased coverage  3.08908e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0479  CDS  NC_009513  532927  534342  1416  sugar transporter  YP_001271084  decreased coverage  7.49242e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0504  CDS  NC_009513  559767  562421  2655  valyl-tRNA synthetase  YP_001271109  decreased coverage  2.38585e-07  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0572  CDS  NC_009513  636671  637324  654  RelA/SpoT domain-containing protein  YP_001271177  decreased coverage  8.68379e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0573  CDS  NC_009513  637328  638140  813  inorganic polyphosphate/ATP-NAD kinase  YP_001271178  decreased coverage  1.82621e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0593  CDS  NC_009513  663203  664450  1248  cell division protein FtsZ  YP_001271197  decreased coverage  1.34247e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0695  CDS  NC_009513  763435  763908  474  hypothetical protein  YP_001271297  decreased coverage  3.02569e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0696  CDS  NC_009513  763929  765116  1188  NusA antitermination factor  YP_001271298  decreased coverage  6.96258e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0707  CDS  NC_009513  774668  775819  1152  chaperone protein DnaJ  YP_001271309  decreased coverage  1.15136e-07  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0730  CDS  NC_009513  799117  800094  978  choloylglycine hydrolase  YP_001271331  decreased coverage  2.86672e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0762  CDS  NC_009513  834474  835160  687  cytidylate kinase  YP_001271363  decreased coverage  6.14962e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0793  CDS  NC_009513  865183  866712  1530  carbohydrate kinase, FGGY  YP_001271393  decreased coverage  0.0018017  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0803  CDS  NC_009513  873859  874632  774  prophage antirepressor  YP_001271403  decreased coverage  1.45423e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_0897  CDS  NC_009513  952334  953224  891  helix-turn-helix domain-containing protein  YP_001271497  decreased coverage  3.54473e-08  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0938  CDS  NC_009513  996296  996820  525  GCN5-related N-acetyltransferase  YP_001271537  decreased coverage  1.6136e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0947  CDS  NC_009513  1004122  1005510  1389  EmrB/QacA family drug resistance transporter  YP_001271546  decreased coverage  4.10718e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0948  CDS  NC_009513  1005665  1006093  429  CopY family transcriptional regulator  YP_001271547  decreased coverage  3.94556e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_0995  CDS  NC_009513  1048597  1049208  612  integrase catalytic subunit  YP_001271593  decreased coverage  1.56889e-07  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1040  CDS  NC_009513  1101444  1101701  258  hypothetical protein  YP_001271637  decreased coverage  5.42415e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1041  CDS  NC_009513  1101780  1103183  1404  amino acid permease-associated region  YP_001271638  decreased coverage  1.84403e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1062  CDS  NC_009513  1125301  1125876  576  ECF subfamily RNA polymerase sigma-24 factor  YP_001271656  decreased coverage  1.36578e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1063  CDS  NC_009513  1125886  1126122  237  hypothetical protein  YP_001271657  decreased coverage  2.23137e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1064  CDS  NC_009513  1126164  1126667  504  hypothetical protein  YP_001271658  decreased coverage  1.12228e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1066  CDS  NC_009513  1128360  1128545  186  4-oxalocrotonate tautomerase  YP_001271660  decreased coverage  1.29971e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1148  CDS  NC_009513  1200338  1201468  1131  phage integrase family protein  YP_001271742  decreased coverage  7.21683e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1149  CDS  NC_009513  1201582  1201968  387  50S ribosomal protein L19  YP_001271743  decreased coverage  7.97714e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1154  CDS  NC_009513  1205097  1205372  276  30S ribosomal protein S16  YP_001271748  decreased coverage  6.77791e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1155  CDS  NC_009513  1205471  1206916  1446  signal recognition particle subunit FFH/SRP54 (srp54)  YP_001271749  decreased coverage  4.91114e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1192  CDS  NC_009513  1242685  1242993  309  50S ribosomal protein L21  YP_001271786  decreased coverage  1.08547e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1261  CDS  NC_009513  1309351  1310553  1203  ABC transporter EcsB  YP_001271855  decreased coverage  1.3948e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1285  CDS  NC_009513  1331315  1332238  924  ribokinase  YP_001271879  decreased coverage  1.50833e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1287  CDS  NC_009513  1333393  1334001  609  hypothetical protein  YP_001271881  decreased coverage  2.96105e-12  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1295  CDS  NC_009513  1341066  1343486  2421  leucyl-tRNA synthetase  YP_001271889  decreased coverage  2.79205e-06  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1320  CDS  NC_009513  1375411  1375659  249  hypothetical protein  YP_001271914  decreased coverage  1.07414e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1321  CDS  NC_009513  1375717  1376730  1014  hypothetical protein  YP_001271915  decreased coverage  2.73017e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1322  CDS  NC_009513  1376730  1377758  1029  glycosyl transferase, group 1  YP_001271916  decreased coverage  5.80469e-10  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1366  CDS  NC_009513  1425439  1425897  459  transposase IS200-family protein  YP_001271952  decreased coverage  0.000626279  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1367  CDS  NC_009513  1426106  1427530  1425  mannosyl-glycoprotein endo-beta-N-acetylglucosamidase  YP_001271953  decreased coverage  0.000955772  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1377  CDS  NC_009513  1437283  1438050  768  hypothetical protein  YP_001271963  decreased coverage  0.00110436  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1443  CDS  NC_009513  1502482  1503597  1116  CamS sex pheromone cAM373 family protein  YP_001272026  decreased coverage  8.55314e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1496  CDS  NC_009513  1548840  1549868  1029  alcohol dehydrogenase  YP_001272079  decreased coverage  1.83073e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1497    NC_009513  1550157  1551084  928      decreased coverage  1.25201e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1554  CDS  NC_009513  1612282  1613214  933  ferrochelatase  YP_001272134  decreased coverage  8.41377e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1555  CDS  NC_009513  1613217  1614521  1305  Mn2+/Fe2+ transporter  YP_001272135  decreased coverage  0.000268932  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1582  CDS  NC_009513  1638830  1639939  1110  membrane protein putative toxin regulator-like protein  YP_001272161  decreased coverage  9.59585e-07  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1602  CDS  NC_009513  1656024  1657091  1068  peptidoglycan-binding LysM  YP_001272179  decreased coverage  3.2696e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1692  CDS  NC_009513  1755384  1756388  1005  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding  YP_001272268  decreased coverage  0.000779216  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1755  CDS  NC_009513  1808041  1809159  1119  hypothetical protein  YP_001272331  decreased coverage  1.22074e-09  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1791  CDS  NC_009513  1842746  1843573  828  homoserine O-succinyltransferase  YP_001272367  decreased coverage  1.11254e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1818  CDS  NC_009513  1871752  1872651  900  inner-membrane translocator  YP_001272394  decreased coverage  2.19565e-06  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1819  CDS  NC_009513  1872644  1873408  765  ABC transporter related  YP_001272395  decreased coverage  1.82766e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1861  CDS  NC_009513  1919211  1920803  1593  Mn2+/Fe2+ transporter  YP_001272436  decreased coverage  3.64072e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_1885  CDS  NC_009513  1944940  1945950  1011  asparagine synthetase AsnA  YP_001272459  decreased coverage  7.27816e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_1941  CDS  NC_009513  1997177  1997944  768  single-stranded nucleic acid binding R3H domain-containing protein  YP_001272510  decreased coverage  1.34575e-05  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_R0057  tRNA  NC_009513  1036507  1036580  74  tRNA-Pro    decreased coverage  5.68305e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_R0058  tRNA  NC_009513  1036584  1036672  89  tRNA-Leu    decreased coverage  5.9003e-11  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_R0083  tRNA  NC_009513  1551234  1551307  74  tRNA-Pro    decreased coverage  1.2865e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
-
 
Lreu_R0084  tRNA  NC_009513  1551350  1551426  77  tRNA-Arg    decreased coverage  1.44766e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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Lreu_R0085  tRNA  NC_009513  1551432  1551503  72  tRNA-Gly    decreased coverage  1.20136e-13  n/a    Lactobacillus reuteri DSM 20016  Bacteria 
 
 
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