37 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Hneap_0001  CDS  NC_013422  150  1559  1410  chromosomal replication initiator protein DnaA  YP_003261914  decreased coverage  0.000259143  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0002  CDS  NC_013422  1623  2735  1113  DNA polymerase III, beta subunit  YP_003261915  decreased coverage  0.00017376  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0165  CDS  NC_013422  167318  167785  468  transcriptional regulator, AsnC family  YP_003262076  decreased coverage  0.00375326  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0206  CDS  NC_013422  210549  211913  1365  outer membrane efflux protein  YP_003262116  decreased coverage  0.00461371  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0207  CDS  NC_013422  212094  212882  789  two component transcriptional regulator, winged helix family  YP_003262117  decreased coverage  0.00814931  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0358  CDS  NC_013422  362922  364154  1233  aspartate kinase  YP_003262268  decreased coverage  0.00114688  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0390  CDS  NC_013422  405027  405299  273  histone family protein DNA-binding protein  YP_003262294  decreased coverage  1.65854e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0439  CDS  NC_013422  461578  461901  324  histone family protein nucleoid-structuring protein H-NS  YP_003262343  decreased coverage  3.52276e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0535  CDS  NC_013422  568470  569507  1038  protein TolA  YP_003262436  decreased coverage  0.000935471  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0536  CDS  NC_013422  569577  570884  1308  Tol-Pal system beta propeller repeat protein TolB  YP_003262437  decreased coverage  0.00175631  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_0597  CDS  NC_013422  641526  642506  981  protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific  YP_003262497  decreased coverage  8.28022e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1141  CDS  NC_013422  1240805  1242103  1299  diguanylate cyclase with PAS/PAC sensor  YP_003263024  decreased coverage  0.00630975  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1190  CDS  NC_013422  1297751  1298452  702  hypothetical protein  YP_003263073  decreased coverage  5.4875e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1191  CDS  NC_013422  1298810  1299316  507  transcriptional regulator, BadM/Rrf2 family  YP_003263074  decreased coverage  4.85487e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1235  CDS  NC_013422  1337175  1338710  1536  deoxyribodipyrimidine photolyase-related protein  YP_003263118  decreased coverage  0.00923753  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1256  CDS  NC_013422  1359422  1359832  411  large conductance mechanosensitive channel protein  YP_003263139  decreased coverage  0.00104806  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1267  CDS  NC_013422  1370526  1371803  1278  Beta-lactamase  YP_003263150  decreased coverage  0.00143172  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1330  CDS  NC_013422  1440826  1442508  1683  ribosomal protein S1  YP_003263212  decreased coverage  0.000364638  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1332  CDS  NC_013422  1442623  1443282  660  cytidylate kinase  YP_003263213  decreased coverage  4.33479e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1340  CDS  NC_013422  1453477  1454100  624  OmpA/MotB domain protein  YP_003263221  decreased coverage  0.000111461  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1469  CDS  NC_013422  1585792  1586292  501  protein of unknown function DUF150  YP_003263348  decreased coverage  0.000542376  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1470  CDS  NC_013422  1586512  1587018  507  hypothetical protein  YP_003263349  decreased coverage  7.06203e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1799  CDS  NC_013422  1934398  1934952  555  FMN-binding domain protein  YP_003263669  decreased coverage  5.08928e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1844  CDS  NC_013422  1980058  1980408  351  cytochrome c class I  YP_003263713  decreased coverage  3.14475e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1845  CDS  NC_013422  1980417  1981775  1359  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_003263714  decreased coverage  0.00111651  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1878  CDS  NC_013422  2014514  2014747  234  hypothetical protein  YP_003263747  decreased coverage  0.00754792  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1923  CDS  NC_013422  2057186  2057425  240  acyl carrier protein  YP_003263792  decreased coverage  0.000792988  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1924  CDS  NC_013422  2057602  2058354  753  3-oxoacyl-(acyl-carrier-protein) reductase  YP_003263793  decreased coverage  0.00155305  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1925  CDS  NC_013422  2058406  2059326  921  malonyl CoA-acyl carrier protein transacylase  YP_003263794  decreased coverage  0.00192713  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1985  CDS  NC_013422  2125229  2125459  231  hypothetical protein  YP_003263854  decreased coverage  2.19867e-05  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_1986  CDS  NC_013422  2125632  2126990  1359  hypothetical protein  YP_003263855  decreased coverage  0.00012685  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2093  CDS  NC_013422  2241428  2242264  837  nuclease (SNase domain protein)  YP_003263958  decreased coverage  0.00243596  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2094  CDS  NC_013422  2242284  2242529  246  ribosomal protein L31  YP_003263959  decreased coverage  0.00123067  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2150  CDS  NC_013422  2310885  2311988  1104  signal transduction histidine kinase, LytS  YP_003264014  decreased coverage  0.000713054  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2151  CDS  NC_013422  2312120  2313547  1428  argininosuccinate lyase  YP_003264015  decreased coverage  0.000172098  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2152    NC_013422  2313614  2314264  651      decreased coverage  0.001722  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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Hneap_2380  CDS  NC_013422  2546579  2547949  1371  Glutamate--putrescine ligase  YP_003264236  decreased coverage  0.0068155  n/a    Halothiobacillus neapolitanus c2  Bacteria 
 
 
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