18 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
HMPREF0424_0005  CDS  NC_013721  5200  7962  +  2763  LPXTG-motif cell wall anchor domain protein  YP_003373279  n/a    decreased coverage  0.0000000417696  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0432  CDS  NC_013721  471585  472667  +  1083  Abi-like protein  YP_003373677  n/a    decreased coverage  0.0000000289684  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0542    NC_013721  580385  580726  +  342      n/a    decreased coverage  0.0000000129615  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0543  CDS  NC_013721  581409  582671  +  1263  YcaO-like protein  YP_003373781  n/a    decreased coverage  0.0000000210818  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0545  CDS  NC_013721  584190  590279  +  6090  GA module  YP_003373783  n/a    decreased coverage  0.00000025562  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0546  CDS  NC_013721  590404  590550  +  147  hypothetical protein  YP_003373784  n/a    decreased coverage  0.00000000872057  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0547  CDS  NC_013721  590708  591964  +  1257  transporter, dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein  YP_003373785  n/a    decreased coverage  0.0000000160767  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0548    NC_013721  592284  592970  -  687      n/a    decreased coverage  0.0000000113219  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0549  CDS  NC_013721  593098  594030  -  933  cysteine synthase A  YP_003373786  n/a    decreased coverage  0.0000000133483  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0746  CDS  NC_013721  843659  843991  -  333  toxin-antitoxin system, toxin component, RelE family  YP_003373973  n/a    decreased coverage  0.00000000854899  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0747  CDS  NC_013721  843988  844302  -  315  putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein  YP_003373974  n/a    decreased coverage  0.00000000814382  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0748  CDS  NC_013721  844709  845467  +  759  hypothetical protein  YP_003373975  n/a    decreased coverage  0.0000000117718  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0749  CDS  NC_013721  846353  847360  +  1008  type II DNA modification methyltransferase family protein  YP_003373976  n/a    decreased coverage  0.0000000140331  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_0750  CDS  NC_013721  847338  851432  +  4095  Eco57I restriction endonuclease  YP_003373977  n/a    decreased coverage  0.000000117598  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_1164  CDS  NC_013721  1359291  1361084  -  1794  LPXTG-motif cell wall anchor domain protein  YP_003374362  n/a    decreased coverage  0.0000000159118  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_1165  CDS  NC_013721  1361793  1362077  -  285  toxin-antitoxin system, antitoxin component, Xre family  YP_003374363  n/a    decreased coverage  0.00000000604987  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_1166  CDS  NC_013721  1362070  1362189  -  120  hypothetical protein  YP_003374364  n/a    decreased coverage  0.00000000587428  Gardnerella vaginalis 409-05  Bacteria 
 
 
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HMPREF0424_1167  CDS  NC_013721  1362858  1363934  -  1077  hypothetical protein  YP_003374365  n/a    decreased coverage  0.0000000105813  Gardnerella vaginalis 409-05  Bacteria 
 
 
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