18 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
HMPREF0424_0005  CDS  NC_013721  5200  7962  2763  LPXTG-motif cell wall anchor domain protein  YP_003373279  n/a    decreased coverage  4.17696e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0432  CDS  NC_013721  471585  472667  1083  Abi-like protein  YP_003373677  n/a    decreased coverage  2.89684e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0542    NC_013721  580385  580726  342      n/a    decreased coverage  1.29615e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0543  CDS  NC_013721  581409  582671  1263  YcaO-like protein  YP_003373781  n/a    decreased coverage  2.10818e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0545  CDS  NC_013721  584190  590279  6090  GA module  YP_003373783  n/a    decreased coverage  2.5562e-07  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0546  CDS  NC_013721  590404  590550  147  hypothetical protein  YP_003373784  n/a    decreased coverage  8.72057e-09  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0547  CDS  NC_013721  590708  591964  1257  transporter, dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein  YP_003373785  n/a    decreased coverage  1.60767e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0548    NC_013721  592284  592970  687      n/a    decreased coverage  1.13219e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0549  CDS  NC_013721  593098  594030  933  cysteine synthase A  YP_003373786  n/a    decreased coverage  1.33483e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0746  CDS  NC_013721  843659  843991  333  toxin-antitoxin system, toxin component, RelE family  YP_003373973  n/a    decreased coverage  8.54899e-09  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0747  CDS  NC_013721  843988  844302  315  putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein  YP_003373974  n/a    decreased coverage  8.14382e-09  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0748  CDS  NC_013721  844709  845467  759  hypothetical protein  YP_003373975  n/a    decreased coverage  1.17718e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0749  CDS  NC_013721  846353  847360  1008  type II DNA modification methyltransferase family protein  YP_003373976  n/a    decreased coverage  1.40331e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_0750  CDS  NC_013721  847338  851432  4095  Eco57I restriction endonuclease  YP_003373977  n/a    decreased coverage  1.17598e-07  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_1164  CDS  NC_013721  1359291  1361084  1794  LPXTG-motif cell wall anchor domain protein  YP_003374362  n/a    decreased coverage  1.59118e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_1165  CDS  NC_013721  1361793  1362077  285  toxin-antitoxin system, antitoxin component, Xre family  YP_003374363  n/a    decreased coverage  6.04987e-09  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_1166  CDS  NC_013721  1362070  1362189  120  hypothetical protein  YP_003374364  n/a    decreased coverage  5.87428e-09  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
HMPREF0424_1167  CDS  NC_013721  1362858  1363934  1077  hypothetical protein  YP_003374365  n/a    decreased coverage  1.05813e-08  Gardnerella vaginalis 409-05  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>