48 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Vapar_0019  CDS  NC_012791  18522  19796  1275  glycosyl transferase family 51  YP_002941948  decreased coverage  0.00362252  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0020  CDS  NC_012791  19807  20376  570  hypothetical protein  YP_002941949  decreased coverage  0.00154703  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0110  CDS  NC_012791  110587  111351  765  2-oxopent-4-enoate hydratase  YP_002942039  decreased coverage  0.00322536  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0278  CDS  NC_012791  298699  299382  684  orotate phosphoribosyltransferase  YP_002942207  decreased coverage  0.00941975  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0279  CDS  NC_012791  299393  300079  687  hypothetical protein  YP_002942208  decreased coverage  0.00278726  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0838  CDS  NC_012791  923636  924634  999  hypothetical protein  YP_002942757  decreased coverage  0.0037307  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0839  CDS  NC_012791  924672  925880  1209  L-carnitine dehydratase/bile acid-inducible protein F  YP_002942758  decreased coverage  0.00466449  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_0924  CDS  NC_012791  1018306  1019526  1221  cell division protein FtsZ  YP_002942841  decreased coverage  0.00449879  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_1094  CDS  NC_012791  1198925  1199923  999  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_002943011  decreased coverage  0.00802536  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_1095  CDS  NC_012791  1199980  1200912  933  Extradiol ring-cleavage dioxygenase class III protein subunit B  YP_002943012  decreased coverage  0.00721185  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_1342  CDS  NC_012791  1458825  1459514  690  GntR domain protein  YP_002943259  decreased coverage  0.00721185  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_1343  CDS  NC_012791  1459616  1461859  2244  penicillin-binding protein 1C  YP_002943260  decreased coverage  0.00458316  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2296  CDS  NC_012791  2455858  2456781  924  hypothetical protein  YP_002944190  decreased coverage  0.00770996  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2451  CDS  NC_012791  2603132  2603551  420  transcriptional regulator, XRE family  YP_002944343  decreased coverage  9.25763e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2452  CDS  NC_012791  2603697  2603942  246  hypothetical protein  YP_002944344  decreased coverage  9.33973e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2453  CDS  NC_012791  2604119  2604601  483  hypothetical protein  YP_002944345  decreased coverage  0.000141524  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2630  CDS  NC_012791  2775231  2775950  720  transcriptional regulator, Crp/Fnr family  YP_002944521  decreased coverage  0.00642792  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2659  CDS  NC_012791  2803665  2804609  945  Adenosylhomocysteine nucleosidase  YP_002944550  decreased coverage  0.00656032  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2680  CDS  NC_012791  2823883  2824686  804  phospholipid/glycerol acyltransferase  YP_002944571  decreased coverage  0.00706693  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2814  CDS  NC_012791  2960090  2961082  993  transcriptional regulator, AraC family  YP_002944700  decreased coverage  0.00480171  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2825  CDS  NC_012791  2970551  2971243  693  hypothetical protein  YP_002944711  decreased coverage  0.00604868  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_2826  CDS  NC_012791  2971257  2973608  2352  putative phosphoketolase  YP_002944712  decreased coverage  0.0035882  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3026  CDS  NC_012791  3184943  3186019  1077  Inositol phosphatase/fructose-16-bisphosphatase  YP_002944911  decreased coverage  0.00242569  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3027  CDS  NC_012791  3186038  3186769  732  HAD-superfamily hydrolase, subfamily IA, variant 3  YP_002944912  decreased coverage  0.00159379  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3207  CDS  NC_012791  3383997  3385538  1542  hypothetical protein  YP_002945091  decreased coverage  0.00101679  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3208  CDS  NC_012791  3385753  3386724  972  aldo/keto reductase  YP_002945092  decreased coverage  0.00561471  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3286  CDS  NC_012791  3460213  3461565  1353  histidine kinase  YP_002945170  decreased coverage  0.00148382  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3604  CDS  NC_012791  3810567  3810932  366  hypothetical protein  YP_002945487  decreased coverage  0.00421282  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3605  CDS  NC_012791  3811018  3812526  1509  RND efflux system, outer membrane lipoprotein, NodT family  YP_002945488  decreased coverage  0.00599235  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3757  CDS  NC_012791  3975177  3976565  1389  glutamyl-tRNA synthetase  YP_002945639  decreased coverage  0.00456424  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3895  CDS  NC_012791  4127085  4127978  894  amidohydrolase 2  YP_002945775  decreased coverage  0.00259115  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3896  CDS  NC_012791  4127988  4129181  1194  L-carnitine dehydratase/bile acid-inducible protein F  YP_002945776  decreased coverage  0.00515668  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3939  CDS  NC_012791  4178674  4179732  1059  NAD-dependent epimerase/dehydratase  YP_002945819  decreased coverage  2.97127e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_3940  CDS  NC_012791  4179749  4181005  1257  hypothetical protein  YP_002945820  decreased coverage  3.44769e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_4339  CDS  NC_012791  4584525  4585586  1062  A/G-specific adenine glycosylase  YP_002946216  decreased coverage  0.00948332  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_4911  CDS  NC_012791  5221156  5221491  336  50S ribosomal protein L23  YP_002946781  decreased coverage  7.71327e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_4912  CDS  NC_012791  5221488  5222108  621  50S ribosomal protein L4  YP_002946782  decreased coverage  1.42333e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5054  CDS  NC_012791  5371802  5372170  369  50S ribosomal protein L18  YP_002946922  decreased coverage  0.00315198  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5180  CDS  NC_012791  5504045  5504554  510  fimbrial protein pilin  YP_002947048  decreased coverage  0.0088813  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5248  CDS  NC_012791  5569490  5570863  1374  Amidase  YP_002947116  decreased coverage  2.83595e-05  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5249  CDS  NC_012791  5570972  5571394  423  Glyoxalase/bleomycin resistance protein/dioxygenase  YP_002947117  decreased coverage  6.6738e-06  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5372  CDS  NC_012792  78440  79318  879  malonate decarboxylase subunit beta  YP_002947240  decreased coverage  0.00542603  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5576  CDS  NC_012792  283708  284217  510  aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein  YP_002947434  decreased coverage  0.000178756  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5577  CDS  NC_012792  284502  284924  423  UspA domain protein  YP_002947435  decreased coverage  0.00018626  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5578  CDS  NC_012792  285037  285690  654  transport-associated  YP_002947436  decreased coverage  0.00026661  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5649  CDS  NC_012792  355210  355902  693  hypothetical protein  YP_002947507  decreased coverage  0.00621516  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5650  CDS  NC_012792  355918  356829  912  transcriptional regulator, LysR family  YP_002947508  decreased coverage  0.00706693  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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Vapar_5806  CDS  NC_012792  510914  513112  2199  para-aminobenzoate synthase, subunit I  YP_002947661  decreased coverage  0.00431194  n/a    Variovorax paradoxus S110  Bacteria 
 
 
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