35 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Gobs_0025  CDS  NC_013757  30859  31938  1080  hypothetical protein  YP_003407208  decreased coverage  0.00265781  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_0477  CDS  NC_013757  522887  523309  423  transcriptional regulator, ArsR family  YP_003407630  decreased coverage  2.63262e-07  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_0761    NC_013757  808380  808889  510      decreased coverage  4.64715e-07  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_0905  CDS  NC_013757  960490  961590  1101  Transglycosylase domain protein  YP_003408038  decreased coverage  0.00644847  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_0906  CDS  NC_013757  961599  962465  867  dimethyladenosine transferase  YP_003408039  decreased coverage  0.00888376  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1347  CDS  NC_013757  1409258  1410490  1233  major facilitator superfamily MFS_1  YP_003408454  decreased coverage  0.00703114  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1425  CDS  NC_013757  1476362  1477987  1626  delta-1-pyrroline-5-carboxylate dehydrogenase  YP_003408528  decreased coverage  0.000421177  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1426  CDS  NC_013757  1478029  1478583  555  protein of unknown function DUF1130  YP_003408529  decreased coverage  0.000439309  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1805    NC_013757  1874018  1874527  510      decreased coverage  0.0079892  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1915  CDS  NC_013757  1984670  1986103  1434  Aldehyde Dehydrogenase  YP_003408989  decreased coverage  0.00249538  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_1945  CDS  NC_013757  2017844  2018911  1068  DNA polymerase LigD, polymerase domain protein  YP_003409012  decreased coverage  0.000971032  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2146  CDS  NC_013757  2231238  2232641  1404  putative signal transduction histidine kinase  YP_003409201  decreased coverage  0.00275148  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2260  CDS  NC_013757  2351619  2353019  1401  FAD linked oxidase domain protein  YP_003409312  decreased coverage  0.00839199  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2338  CDS  NC_013757  2426874  2427083  210  integrase catalytic subunit  YP_003409386  decreased coverage  0.00013829  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2339  CDS  NC_013757  2427311  2430067  2757  drug resistance transporter, EmrB/QacA subfamily  YP_003409387  decreased coverage  0.00297311  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2652  CDS  NC_013757  2759364  2760635  1272  Glycosyltransferase 28 domain protein  YP_003409658  decreased coverage  0.00514492  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2654  CDS  NC_013757  2761399  2761641  243  hypothetical protein  YP_003409660  decreased coverage  0.00923338  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2655  CDS  NC_013757  2761725  2761991  267  hypothetical protein  YP_003409661  decreased coverage  0.00999447  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2657  CDS  NC_013757  2763840  2764574  735  hypothetical protein  YP_003409663  decreased coverage  0.00775221  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2741  CDS  NC_013757  2852581  2853309  729  transcriptional regulator, GntR family  YP_003409744  decreased coverage  0.0041351  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2820  CDS  NC_013757  2934981  2937245  2265  helicase, RecD/TraA family  YP_003409821  decreased coverage  0.00387787  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2821  CDS  NC_013757  2937430  2937930  501  single-strand binding protein  YP_003409822  decreased coverage  0.000844466  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_2822  CDS  NC_013757  2938167  2939708  1542  major facilitator superfamily MFS_1  YP_003409823  decreased coverage  0.00189788  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3055  CDS  NC_013757  3203076  3203702  627  GCN5-related N-acetyltransferase  YP_003410036  decreased coverage  0.00454604  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3057  CDS  NC_013757  3204397  3204747  351  YCII-related protein  YP_003410038  decreased coverage  0.00227791  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3058  CDS  NC_013757  3204752  3205975  1224  putative RNA polymerase, sigma-24 subunit, ECF subfamily  YP_003410039  decreased coverage  0.00390728  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3168  CDS  NC_013757  3324577  3325404  828  peptidyl-prolyl cis-trans isomerase cyclophilin type  YP_003410145  decreased coverage  0.00451677  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3270  CDS  NC_013757  3439528  3440520  993  S-adenosyl-methyltransferase MraW  YP_003410246  decreased coverage  0.000287987  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_3467  CDS  NC_013757  3649191  3650591  1401  acyltransferase, WS/DGAT/MGAT  YP_003410436  decreased coverage  0.00478888  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4049  CDS  NC_013757  4244810  4245457  648  2-phospho-L-lactate guanylyltransferase CofC  YP_003410985  decreased coverage  0.00779937  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4336  CDS  NC_013757  4561978  4562778  801  hypothetical protein  YP_003411269  decreased coverage  0.00845407  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4344    NC_013757  4567680  4567892  213      decreased coverage  0.00887351  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4345  CDS  NC_013757  4567894  4568244  351  hypothetical protein  YP_003411274  decreased coverage  0.00982633  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4705  CDS  NC_013757  4921751  4923163  1413  major facilitator superfamily MFS_1  YP_003411623  decreased coverage  0.00787464  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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Gobs_4814  CDS  NC_013757  5030962  5033721  2760  histidine kinase  YP_003411721  decreased coverage  0.00150972  n/a    Geodermatophilus obscurus DSM 43160  Bacteria 
 
 
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