67 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Apre_0009  CDS  NC_013171  9254  10021  768  RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily  YP_003151785  decreased coverage  4.98773e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0010  CDS  NC_013171  10128  11432  1305  hypothetical protein  YP_003151786  decreased coverage  4.57156e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0038  CDS  NC_013171  46128  47330  1203  Na+ dependent nucleoside transporter domain protein  YP_003151814  decreased coverage  9.07116e-05  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0069  CDS  NC_013171  88131  88583  453  Galactose-6-phosphate isomerase  YP_003151844  decreased coverage  1.7744e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0084  CDS  NC_013171  105887  106513  627  hypothetical protein  YP_003151858  decreased coverage  4.35503e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0095  CDS  NC_013171  116770  117216  447  MaoC domain protein dehydratase  YP_003151869  decreased coverage  5.82569e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0106  CDS  NC_013171  126940  127947  1008  Mg2 transporter protein CorA family protein  YP_003151880  decreased coverage  1.84046e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0112    NC_013171  133966  135378  1413      decreased coverage  5.09087e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0136  CDS  NC_013171  161271  162641  1371  DNA repair protein RadA  YP_003151909  decreased coverage  3.64921e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0181  CDS  NC_013171  208512  209108  597  hypothetical protein  YP_003151954  decreased coverage  6.72216e-05  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0200  CDS  NC_013171  226527  227516  990  protein-N(pi)-phosphohistidine--sugar phosphotransferase  YP_003151973  decreased coverage  2.59121e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0201  CDS  NC_013171  227528  228343  816  phosphotransferase system PTS sorbose-specific IIC subunit  YP_003151974  decreased coverage  8.93723e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0266  CDS  NC_013171  298163  299368  1206  carboxyl-terminal protease  YP_003152038  decreased coverage  5.03976e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0267  CDS  NC_013171  299369  300739  1371  magnesium transporter  YP_003152039  decreased coverage  1.06938e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0359  CDS  NC_013171  411376  412077  702  hypothetical protein  YP_003152129  decreased coverage  3.92e-06  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0360  CDS  NC_013171  412067  412639  573  hypothetical protein  YP_003152130  decreased coverage  7.17889e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0379  CDS  NC_013171  430113  430832  720  CutC family protein  YP_003152149  decreased coverage  7.28727e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0386  CDS  NC_013171  437715  438011  297  protein of unknown function DUF77  YP_003152156  decreased coverage  3.21713e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0397  CDS  NC_013171  449140  450369  1230  sodium:dicarboxylate symporter  YP_003152167  decreased coverage  2.67322e-06  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0465  CDS  NC_013171  531311  532240  930  binding-protein-dependent transport systems inner membrane component  YP_003152233  decreased coverage  2.43016e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0476  CDS  NC_013171  543917  545035  1119  putative virion core protein  YP_003152244  decreased coverage  4.18694e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0477  CDS  NC_013171  545256  546485  1230  sortase B cell surface sorting signal  YP_003152245  decreased coverage  3.83377e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0499  CDS  NC_013171  571336  572040  705  YodA domain protein  YP_003152267  decreased coverage  3.47899e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0557  CDS  NC_013171  649410  650840  1431  hypothetical protein  YP_003152324  decreased coverage  5.98736e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0558  CDS  NC_013171  650887  652278  1392  hypothetical protein  YP_003152325  decreased coverage  6.23163e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0655  CDS  NC_013171  750319  751512  1194  acetate kinase  YP_003152415  decreased coverage  4.14678e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0750  CDS  NC_013171  850581  851885  1305  transcription termination factor Rho  YP_003152499  decreased coverage  7.55075e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0751  CDS  NC_013171  851956  852159  204  ribosomal protein L31  YP_003152500  decreased coverage  2.24583e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0752  CDS  NC_013171  852214  853002  789  modification methylase, HemK family  YP_003152501  decreased coverage  1.41124e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0849  CDS  NC_013171  923266  925482  2217  phage tail tape measure protein, TP901 family  YP_003152598  decreased coverage  0.000280434  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0850  CDS  NC_013171  925485  926123  639  hypothetical protein  YP_003152599  decreased coverage  0.000175347  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0864  CDS  NC_013171  934971  935720  750  peptidoglycan hydrolase  YP_003152613  decreased coverage  9.39547e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0865  CDS  NC_013171  935730  935936  207  hypothetical protein  YP_003152614  decreased coverage  1.50603e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0964  CDS  NC_013171  1031442  1031720  279  histone family protein DNA-binding protein  YP_003152713  decreased coverage  9.94236e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_0965  CDS  NC_013171  1031802  1032728  927  hypothetical protein  YP_003152714  decreased coverage  9.47907e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1113  CDS  NC_013171  1195951  1197102  1152  major facilitator superfamily MFS_1  YP_003152861  decreased coverage  3.78306e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1137  CDS  NC_013171  1222907  1223770  864  transcriptional regulator, AraC family  YP_003152884  decreased coverage  1.01216e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1218  CDS  NC_013171  1299420  1300502  1083  hypothetical protein  YP_003152963  decreased coverage  3.75715e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1292  CDS  NC_013171  1389672  1390301  630  Ribonuclease H  YP_003153036  decreased coverage  3.58144e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1306  CDS  NC_013171  1398874  1400121  1248  peptidase S1 and S6 chymotrypsin/Hap  YP_003153050  decreased coverage  6.92323e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1307  CDS  NC_013171  1400279  1401394  1116  ABC-2 type transporter  YP_003153051  decreased coverage  3.98946e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1308  CDS  NC_013171  1401381  1402466  1086  hypothetical protein  YP_003153052  decreased coverage  3.75715e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1309  CDS  NC_013171  1402468  1403409  942  ABC transporter related  YP_003153053  decreased coverage  2.89319e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1322  CDS  NC_013171  1413933  1414736  804  electron transport complex, RnfABCDGE type, B subunit  YP_003153066  decreased coverage  1.22015e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1323  CDS  NC_013171  1414746  1415321  576  electron transport complex, RnfABCDGE type, A subunit  YP_003153067  decreased coverage  5.34206e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1324  CDS  NC_013171  1415335  1415982  648  electron transport complex, RnfABCDGE type, E subunit  YP_003153068  decreased coverage  6.80415e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1344  CDS  NC_013171  1446399  1446953  555  translation initiation factor IF-3  YP_003153088  decreased coverage  1.82733e-06  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1345  CDS  NC_013171  1447127  1447579  453  transcriptional regulator, MarR family  YP_003153089  decreased coverage  1.42864e-06  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1425  CDS  NC_013171  1540931  1542280  1350  xanthine permease  YP_003153169  decreased coverage  4.66476e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1507  CDS  NC_013171  1642670  1643509  840  hypothetical protein  YP_003153249  decreased coverage  1.23255e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1508  CDS  NC_013171  1643554  1643784  231  glutaredoxin  YP_003153250  decreased coverage  1.14631e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1510  CDS  NC_013171  1644658  1645188  531  primase/topoisomerase like protein  YP_003153252  decreased coverage  4.57105e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1511  CDS  NC_013171  1645185  1645946  762  hydrolase, TatD family  YP_003153253  decreased coverage  9.02805e-09  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1512  CDS  NC_013171  1645946  1647892  1947  methionyl-tRNA synthetase  YP_003153254  decreased coverage  5.47947e-07  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1513  CDS  NC_013171  1648076  1649455  1380  amino acid carrier protein  YP_003153255  decreased coverage  7.93212e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1592  CDS  NC_013171  1731491  1732885  1395  sugar (Glycoside-Pentoside-Hexuronide) transporter  YP_003153334  decreased coverage  0.00442608  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1603  CDS  NC_013171  1744733  1746397  1665  alpha amylase catalytic region  YP_003153345  decreased coverage  9.68128e-06  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1614  CDS  NC_013171  1759549  1760565  1017  Alcohol dehydrogenase GroES domain protein  YP_003153356  decreased coverage  2.16473e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1642  CDS  NC_013171  1784272  1785303  1032  RNA polymerase, sigma 32 subunit, RpoH  YP_003153384  decreased coverage  1.92835e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1665  CDS  NC_013171  1807438  1807824  387  PTS system fructose subfamily IIA component  YP_003153407  decreased coverage  4.18969e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1682  CDS  NC_013171  1829949  1831280  1332  protein of unknown function DUF21  YP_003153423  decreased coverage  4.71578e-05  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1683  CDS  NC_013171  1831364  1832950  1587  Na+/H+ antiporter NhaC  YP_003153424  decreased coverage  0.00319882  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1701  CDS  NC_013171  1850850  1851338  489  RDD domain containing protein  YP_003153442  decreased coverage  4.82282e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1702  CDS  NC_013171  1851319  1852302  984  signal peptide peptidase SppA, 36K type  YP_003153443  decreased coverage  2.1867e-08  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1745  CDS  NC_013164  7250  8866  1617  ABC transporter related  YP_003142328  decreased coverage  0.000253121  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1851  CDS  NC_013164  113340  114887  1548  hypothetical protein  YP_003142425  decreased coverage  1.13905e-05  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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Apre_1852  CDS  NC_013164  114859  115464  606  two component transcriptional regulator, LuxR family  YP_003142426  decreased coverage  0.000213283  n/a    Anaerococcus prevotii DSM 20548  Bacteria 
 
 
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