50 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dbac_0143  CDS  NC_013173  172707  173627  921  putative manganese-dependent inorganic pyrophosphatase  YP_003156687  decreased coverage  7.7793e-08  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0144    NC_013173  173718  174386  669      decreased coverage  4.95152e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0249  CDS  NC_013173  293188  293655  468  cytochrome c family protein  YP_003156792  decreased coverage  6.23647e-06  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0279  CDS  NC_013173  331150  332463  1314  sulfite reductase, dissimilatory-type alpha subunit  YP_003156822  decreased coverage  4.69369e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0339  CDS  NC_013173  397813  398469  657  TrkA-N domain protein  YP_003156882  decreased coverage  0.00738023  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0514  CDS  NC_013173  594727  595209  483  hypothetical protein  YP_003157054  decreased coverage  1.23874e-06  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0665  CDS  NC_013173  741364  742389  1026  rod shape-determining protein MreB  YP_003157204  decreased coverage  2.00896e-06  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_0858  CDS  NC_013173  930660  931445  786  phosphonate ABC transporter, inner membrane subunit  YP_003157392  decreased coverage  0.00704551  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1070  CDS  NC_013173  1175751  1178462  2712  ATPase, P-type (transporting), HAD superfamily, subfamily IC  YP_003157599  decreased coverage  0.00103612  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1071    NC_013173  1178656  1178874  219      decreased coverage  1.81601e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1072    NC_013173  1178934  1179163  230      decreased coverage  1.88903e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1073    NC_013173  1179160  1179648  489      decreased coverage  4.28725e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1076  CDS  NC_013173  1180773  1182698  1926  sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family  YP_003157600  decreased coverage  0.000748726  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1248  CDS  NC_013173  1377469  1377996  528  Lytic transglycosylase catalytic  YP_003157767  decreased coverage  0.00404625  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1249  CDS  NC_013173  1378018  1378398  381  hypothetical protein  YP_003157768  decreased coverage  0.00290772  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1451  CDS  NC_013173  1640442  1642304  1863  DNA topoisomerase III  YP_003157961  decreased coverage  0.000215899  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1452  CDS  NC_013173  1642301  1643479  1179  response regulator receiver protein  YP_003157962  decreased coverage  0.000159785  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1493  CDS  NC_013173  1684610  1685038  429  hypothetical protein  YP_003158002  decreased coverage  0.00781741  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1510  CDS  NC_013173  1707147  1708871  1725  methyl-accepting chemotaxis sensory transducer with Cache sensor  YP_003158019  decreased coverage  0.00534894  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1530  CDS  NC_013173  1736327  1736692  366  hypothetical protein  YP_003158039  decreased coverage  0.00106363  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1531  CDS  NC_013173  1737035  1737550  516  UspA domain protein  YP_003158040  decreased coverage  0.00154671  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1560  CDS  NC_013173  1766981  1767190  210  hypothetical protein  YP_003158069  decreased coverage  0.00968564  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1690  CDS  NC_013173  1921363  1923252  1890  AMP-dependent synthetase and ligase  YP_003158198  decreased coverage  0.00282704  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1734  CDS  NC_013173  1975615  1976838  1224  peptidase M24  YP_003158241  decreased coverage  0.00987909  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1735  CDS  NC_013173  1976835  1977872  1038  Radical SAM domain protein  YP_003158242  decreased coverage  0.00136048  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1790  CDS  NC_013173  2041801  2042202  402  Holliday junction resolvase YqgF  YP_003158297  decreased coverage  0.00751815  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1791  CDS  NC_013173  2042199  2043218  1020  aminodeoxychorismate lyase  YP_003158298  decreased coverage  0.00439567  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1813  CDS  NC_013173  2067104  2068684  1581  pseudouridine synthase, RluA family  YP_003158320  decreased coverage  9.64916e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1843  CDS  NC_013173  2101466  2102791  1326  nucleotide sugar dehydrogenase  YP_003158350  decreased coverage  2.29884e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1952  CDS  NC_013173  2245470  2246927  1458  cysteinyl-tRNA synthetase  YP_003158456  decreased coverage  0.00515246  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_1983  CDS  NC_013173  2276097  2276681  585  Fimbrial assembly family protein  YP_003158487  decreased coverage  0.00407145  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2020  CDS  NC_013173  2323925  2325286  1362  putative aminopeptidase 1  YP_003158522  decreased coverage  1.90862e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2021  CDS  NC_013173  2325382  2325546  165  Rubredoxin-type Fe(Cys)4 protein  YP_003158523  decreased coverage  5.0094e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2022  CDS  NC_013173  2325597  2327015  1419  30S ribosomal protein S1  YP_003158524  decreased coverage  5.78746e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2101  CDS  NC_013173  2408682  2410718  2037  PAS/PAC sensor hybrid histidine kinase  YP_003158602  decreased coverage  0.007905  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2102  CDS  NC_013173  2410708  2411286  579  hypothetical protein  YP_003158603  decreased coverage  0.00483592  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2466  CDS  NC_013173  2831145  2831651  507  Ferroxidase  YP_003158961  decreased coverage  3.23257e-06  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2467  CDS  NC_013173  2831682  2832197  516  Redoxin domain protein  YP_003158962  decreased coverage  3.76738e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2594  CDS  NC_013173  2954820  2955017  198  hypothetical protein  YP_003159087  decreased coverage  1.70422e-08  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2688  CDS  NC_013173  3079755  3080228  474  transcriptional regulator, AsnC family  YP_003159181  decreased coverage  4.32173e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2742  CDS  NC_013173  3131470  3132357  888  hypothetical protein  YP_003159234  decreased coverage  0.00120775  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2743  CDS  NC_013173  3132517  3134241  1725  single-stranded-DNA-specific exonuclease RecJ  YP_003159235  decreased coverage  0.00277097  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2785  CDS  NC_013173  3166718  3167140  423  ribosomal protein L11  YP_003159277  decreased coverage  3.21602e-05  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2786  CDS  NC_013173  3167166  3167708  543  NusG antitermination factor  YP_003159278  decreased coverage  0.000144907  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2867  CDS  NC_013173  3249396  3250697  1302  protein of unknown function DUF610 YibQ  YP_003159358  decreased coverage  0.00589273  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_2892  CDS  NC_013173  3272588  3273607  1020  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_003159383  decreased coverage  0.00502813  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_3096  CDS  NC_013173  3505866  3507020  1155  DNA polymerase III, beta subunit  YP_003159587  decreased coverage  0.00256745  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_3451  CDS  NC_013173  3901448  3902209  762  Extradiol ring-cleavage dioxygenase class III protein subunit B  YP_003159939  decreased coverage  6.70941e-06  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_3452  CDS  NC_013173  3902218  3903072  855  hypothetical protein  YP_003159940  decreased coverage  1.22936e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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Dbac_3453  CDS  NC_013173  3903090  3903668  579  NAD(P)H dehydrogenase (quinone)  YP_003159941  decreased coverage  4.56035e-07  n/a    Desulfomicrobium baculatum DSM 4028  Bacteria 
 
 
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