28 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Plim_0323  CDS  NC_014148  402845  404251  1407  3-isopropylmalate dehydratase, large subunit  YP_003628373  decreased coverage  0.000670591  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_0324  CDS  NC_014148  404657  405778  1122  permease YjgP/YjgQ family protein  YP_003628374  decreased coverage  0.000779527  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_0378  CDS  NC_014148  468753  471956  3204  protein of unknown function DUF1549  YP_003628428  decreased coverage  0.00109161  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1411  CDS  NC_014148  1802850  1803068  219  hypothetical protein  YP_003629444  decreased coverage  0.00384821  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1469  CDS  NC_014148  1891644  1892627  984  hypothetical protein  YP_003629501  decreased coverage  0.000478858  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1470  CDS  NC_014148  1892630  1893838  1209  8-amino-7-oxononanoate synthase  YP_003629502  decreased coverage  0.000728084  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1493  CDS  NC_014148  1924290  1925795  1506  protein of unknown function DUF404  YP_003629525  decreased coverage  0.0051317  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1813  CDS  NC_014148  2360164  2361444  1281  type II secretion system protein  YP_003629842  decreased coverage  0.00328504  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1925  CDS  NC_014148  2513498  2514373  876  dihydropteroate synthase  YP_003629954  decreased coverage  3.53988e-06  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_1926  CDS  NC_014148  2514811  2515443  633  hypothetical protein  YP_003629955  decreased coverage  1.24495e-06  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2060  CDS  NC_014148  2671433  2673004  1572  hypothetical protein  YP_003630087  decreased coverage  0.00724012  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2158  CDS  NC_014148  2780828  2782087  1260  hypothetical protein  YP_003630183  decreased coverage  0.00118879  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2159  CDS  NC_014148  2782238  2783254  1017  signal peptide peptidase SppA, 36K type  YP_003630184  decreased coverage  0.0023667  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2229  CDS  NC_014148  2870901  2872790  1890  1,4-alpha-glucan branching enzyme  YP_003630254  decreased coverage  0.00541672  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2270  CDS  NC_014148  2932163  2932903  741  protein of unknown function DUF901  YP_003630295  decreased coverage  0.00783203  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_2463  CDS  NC_014148  3213116  3213271  156  hypothetical protein  YP_003630488  decreased coverage  8.82821e-06  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3018  CDS  NC_014148  3910755  3912080  1326  hypothetical protein  YP_003631039  decreased coverage  0.00034439  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3139  CDS  NC_014148  4058906  4059460  555  hypothetical protein  YP_003631153  decreased coverage  0.00837741  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3236  CDS  NC_014148  4178674  4180347  1674  dihydroxy-acid dehydratase  YP_003631249  decreased coverage  3.56342e-05  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3237  CDS  NC_014148  4180410  4180697  288  Antibiotic biosynthesis monooxygenase  YP_003631250  decreased coverage  8.2945e-06  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3294  CDS  NC_014148  4252846  4253220  375  hypothetical protein  YP_003631306  decreased coverage  0.000288025  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3549  CDS  NC_014148  4580958  4582151  1194  hypothetical protein  YP_003631561  decreased coverage  0.00308434  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_3550  CDS  NC_014148  4582220  4582720  501  hypothetical protein  YP_003631562  decreased coverage  0.00119839  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_4055  CDS  NC_014148  5208076  5209491  1416  hypothetical protein  YP_003632065  decreased coverage  0.00238853  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_4056  CDS  NC_014148  5210242  5210529  288  hypothetical protein  YP_003632066  decreased coverage  0.000879203  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_4209  CDS  NC_014148  5382418  5382900  483  Peroxiredoxin  YP_003632216  decreased coverage  0.00311011  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_4237  CDS  NC_014148  5411388  5413013  1626  Protein of unknown function DUF1800  YP_003632243  decreased coverage  2.29991e-05  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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Plim_4295  CDS  NC_014149  31127  31486  360  hypothetical protein  YP_003632301  decreased coverage  1.48954e-17  n/a    Planctomyces limnophilus DSM 3776  Bacteria 
 
 
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