85 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Aaci_0017  CDS  NC_013205  23592  24635  1044  hypothetical protein  YP_003183471  decreased coverage  9.60613e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0071  CDS  NC_013205  89934  90287  354  hypothetical protein  YP_003183524  decreased coverage  0.000941053  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0095  CDS  NC_013205  115223  116308  1086  hypothetical protein  YP_003183548  decreased coverage  0.000254666  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0174  CDS  NC_013205  192629  193507  879  4-diphosphocytidyl-2C-methyl-D-erythritolkinase  YP_003183626  decreased coverage  0.00151194  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0208  CDS  NC_013205  223430  223906  477  transcription elongation factor GreA  YP_003183660  decreased coverage  1.82043e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0402  CDS  NC_013205  459350  460309  960  protein of unknown function DUF6 transmembrane  YP_003183850  decreased coverage  8.93438e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0406  CDS  NC_013205  469731  470621  891  protein of unknown function DUF214  YP_003183854  decreased coverage  0.00446449  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0480  CDS  NC_013205  545615  547435  1821  type III restriction protein res subunit  YP_003183927  decreased coverage  9.16808e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0481  CDS  NC_013205  547541  547720  180  hypothetical protein  YP_003183928  decreased coverage  9.16528e-08  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_0482  CDS  NC_013205  547717  548106  390  hypothetical protein  YP_003183929  decreased coverage  1.78511e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0758  CDS  NC_013205  815505  816074  570  Methyltransferase type 11  YP_003184191  decreased coverage  0.00287175  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0799  CDS  NC_013205  872120  873565  1446  2-methylcitrate dehydratase  YP_003184231  decreased coverage  0.0023431  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0823  CDS  NC_013205  893185  893838  654  FMN-binding negative transcriptional regulator  YP_003184254  decreased coverage  0.00293061  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_0923  CDS  NC_013205  1002256  1003368  1113  Histidine--tRNA ligase  YP_003184352  decreased coverage  0.00438339  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1007  CDS  NC_013205  1077673  1078881  1209  DNA repair nucleotidyltransferase/DNA polymerase-like protein  YP_003184434  decreased coverage  3.70586e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1065  CDS  NC_013205  1133286  1133540  255  transcriptional regulator, XRE family  YP_003184491  decreased coverage  0.00304407  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1071  CDS  NC_013205  1135681  1135797  117  hypothetical protein  YP_003184497  decreased coverage  0.00220808  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1072  CDS  NC_013205  1135794  1136033  240  hypothetical protein  YP_003184498  decreased coverage  0.00264429  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1080  CDS  NC_013205  1143953  1145776  1824  type III restriction protein res subunit  YP_003184506  decreased coverage  8.86806e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1081  CDS  NC_013205  1145813  1146343  531  RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily  YP_003184507  decreased coverage  1.651e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1082  CDS  NC_013205  1146349  1146525  177  hypothetical protein  YP_003184508  decreased coverage  5.71629e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1083    NC_013205  1146561  1146707  147      decreased coverage  4.89555e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1084  CDS  NC_013205  1146712  1146906  195  hypothetical protein  YP_003184509  decreased coverage  5.0318e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1085  CDS  NC_013205  1146897  1147103  207  hypothetical protein  YP_003184510  decreased coverage  4.59218e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1086  CDS  NC_013205  1147210  1147515  306  hypothetical protein  YP_003184511  decreased coverage  6.55014e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1087  CDS  NC_013205  1147503  1148612  1110  DNA polymerase III, beta subunit  YP_003184512  decreased coverage  7.22327e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1088  CDS  NC_013205  1148646  1148864  219  hypothetical protein  YP_003184513  decreased coverage  5.56159e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1089  CDS  NC_013205  1148851  1149321  471  hypothetical protein  YP_003184514  decreased coverage  1.42718e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1123  CDS  NC_013205  1175679  1176059  381  transcriptional regulator, ArsR family  YP_003184547  decreased coverage  2.69044e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1124    NC_013205  1176219  1176551  333      decreased coverage  1.89143e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1200  CDS  NC_013205  1239568  1241250  1683  hypothetical protein  YP_003184620  decreased coverage  8.82868e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1201  CDS  NC_013205  1241315  1241785  471  AIG2 family protein  YP_003184621  decreased coverage  2.20206e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1215  CDS  NC_013205  1251893  1253233  1341  extracellular solute-binding protein family 1  YP_003184633  decreased coverage  6.4062e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1216  CDS  NC_013205  1253312  1254259  948  binding-protein-dependent transport systems inner membrane component  YP_003184634  decreased coverage  2.28392e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1217  CDS  NC_013205  1254252  1255079  828  binding-protein-dependent transport systems inner membrane component  YP_003184635  decreased coverage  1.78765e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1218  CDS  NC_013205  1255113  1258238  3126  glycoside hydrolase family 2 TIM barrel  YP_003184636  decreased coverage  0.000962199  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1233  CDS  NC_013205  1277754  1278881  1128  Haloacid dehalogenase domain protein hydrolase  YP_003184651  decreased coverage  0.00126511  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1246  CDS  NC_013205  1301770  1302162  393  Rhodanese domain protein  YP_003184664  decreased coverage  0.000851542  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1247  CDS  NC_013205  1302199  1302540  342  thioredoxin  YP_003184665  decreased coverage  0.000845354  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1255  CDS  NC_013205  1309237  1309533  297  protein of unknown function DUF1292  YP_003184673  decreased coverage  0.000140212  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1418  CDS  NC_013205  1467901  1468620  720  hypothetical protein  YP_003184833  decreased coverage  0.000757039  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1419  CDS  NC_013205  1469037  1469738  702  ribosomal protein S2  YP_003184834  decreased coverage  3.75862e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1430  CDS  NC_013205  1481597  1483426  1830  GTP-binding protein TypA  YP_003184845  decreased coverage  0.000885386  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1431  CDS  NC_013205  1483665  1484138  474  protein of unknown function DUF150  YP_003184846  decreased coverage  1.99616e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1460  CDS  NC_013205  1514480  1516135  1656  beta-lactamase domain protein  YP_003184874  decreased coverage  1.7363e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1541    NC_013205  1597597  1599037  1441      decreased coverage  3.30462e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1542  CDS  NC_013205  1599223  1600167  945  hypothetical protein  YP_003184946  decreased coverage  8.12437e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1598  CDS  NC_013205  1665310  1665729  420  thioesterase superfamily protein  YP_003184999  decreased coverage  1.42015e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1666  CDS  NC_013205  1738144  1739175  1032  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_003185067  decreased coverage  1.06955e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1703  CDS  NC_013205  1769549  1770706  1158  RNA binding S1 domain protein  YP_003185104  decreased coverage  2.41805e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1714  CDS  NC_013205  1784800  1784967  168  hypothetical protein  YP_003185115  decreased coverage  6.95208e-08  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1715  CDS  NC_013205  1785059  1786447  1389  UvrD/REP helicase  YP_003185116  decreased coverage  3.56586e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_1832  CDS  NC_013205  1880251  1880787  537  hypothetical protein  YP_003185233  decreased coverage  0.00111515  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1846  CDS  NC_013205  1895856  1897163  1308  trigger factor  YP_003185247  decreased coverage  3.27269e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_1847  CDS  NC_013205  1897528  1898124  597  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family  YP_003185248  decreased coverage  3.01722e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2033  CDS  NC_013205  2078744  2079142  399  arsenate reductase (thioredoxin)  YP_003185434  decreased coverage  0.00780291  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2052  CDS  NC_013205  2101681  2103237  1557  Propionyl-CoA carboxylase  YP_003185453  decreased coverage  0.00336851  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2172  CDS  NC_013205  2231831  2232295  465  translation initiation factor IF-3  YP_003185570  decreased coverage  8.64988e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2180  CDS  NC_013205  2242895  2244220  1326  xylose isomerase  YP_003185578  decreased coverage  0.000174675  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2197  CDS  NC_013205  2259731  2259931  201  cold-shock DNA-binding domain protein  YP_003185595  decreased coverage  1.06738e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2210  CDS  NC_013205  2270794  2271276  483  hypothetical protein  YP_003185608  decreased coverage  0.00461361  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2212  CDS  NC_013205  2271995  2272699  705  Rhomboid family protein  YP_003185610  decreased coverage  0.00605445  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2378  CDS  NC_013205  2441193  2441981  789  transcriptional repressor CodY  YP_003185774  decreased coverage  5.94267e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2544  CDS  NC_013205  2616959  2618176  1218  hypothetical protein  YP_003185938  decreased coverage  1.82738e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2645  CDS  NC_013205  2721625  2722410  786  protein of unknown function DUF81  YP_003186038  decreased coverage  0.000890995  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2662  CDS  NC_013205  2742192  2742566  375  protein of unknown function DUF322  YP_003186055  decreased coverage  7.16199e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2684  CDS  NC_013205  2763481  2764107  627  30S ribosomal protein S4  YP_003186077  decreased coverage  0.000106865  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2685  CDS  NC_013205  2764170  2764586  417  30S ribosomal protein S11  YP_003186078  decreased coverage  0.000312441  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2686  CDS  NC_013205  2764605  2764973  369  30S ribosomal protein S13  YP_003186079  decreased coverage  0.000961805  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2711  CDS  NC_013205  2776161  2776796  636  50S ribosomal protein L3  YP_003186104  decreased coverage  3.99657e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2712  CDS  NC_013205  2776851  2777159  309  ribosomal protein S10  YP_003186105  decreased coverage  1.60608e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2713  CDS  NC_013205  2777437  2778624  1188  translation elongation factor Tu  YP_003186106  decreased coverage  1.52961e-05  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2746  CDS  NC_013205  2811452  2811991  540  CDP-diacylglycerol/glycerol-3-phosphate3- phospha tidyltransferase  YP_003186139  decreased coverage  1.68146e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2782  CDS  NC_013205  2841229  2842533  1305  transcription termination factor Rho  YP_003186175  decreased coverage  4.23025e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_2910  CDS  NC_013205  2983174  2983860  687  biotin/lipoyl attachment domain-containing protein  YP_003186303  decreased coverage  2.63786e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_2911  CDS  NC_013205  2984095  2984742  648  heat shock protein DnaJ domain protein  YP_003186304  decreased coverage  2.93792e-06  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_3000  CDS  NC_013206  43775  44206  432  hypothetical protein  YP_003186392  decreased coverage  1.81354e-07  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0046  tRNA  NC_013205  1279162  1279253  92  tRNA-Ser    decreased coverage  0.00112591  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0047  tRNA  NC_013205  1279264  1279340  77  tRNA-Met    decreased coverage  0.00104453  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0048  tRNA  NC_013205  1279344  1279418  75  tRNA-Thr    decreased coverage  0.00108032  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
-
 
Aaci_R0061  tRNA  NC_013205  1897306  1897381  76  tRNA-Arg    decreased coverage  6.31723e-08  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0062  tRNA  NC_013205  1897386  1897459  74  tRNA-Gly    decreased coverage  5.96481e-08  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0071  tRNA  NC_013205  2270371  2270445  75  tRNA-Gly    decreased coverage  0.00174778  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0072  tRNA  NC_013205  2270451  2270526  76  tRNA-Phe    decreased coverage  0.00159323  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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Aaci_R0073  tRNA  NC_013205  2270540  2270614  75  tRNA-Ala    decreased coverage  0.00171316  n/a    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria 
 
 
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