52 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Coch_0029  CDS  NC_013162  33111  34463  1353  acetyl-CoA carboxylase, biotin carboxylase  YP_003140156  decreased coverage  0.00270537  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0051  CDS  NC_013162  64185  64595  411  hypothetical protein  YP_003140177  decreased coverage  0.00971016  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0062  CDS  NC_013162  81664  82662  999  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit  YP_003140188  decreased coverage  5.33837e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0129  CDS  NC_013162  149083  150843  1761  30S ribosomal protein S1  YP_003140255  decreased coverage  0.00811703  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0134  CDS  NC_013162  156068  158071  2004  hypothetical protein  YP_003140260  decreased coverage  0.0021689  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0177  CDS  NC_013162  213474  214130  657  hypothetical protein  YP_003140301  decreased coverage  0.00582655  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0255  CDS  NC_013162  331892  332977  1086  ATPase associated with various cellular activities AAA_5  YP_003140379  decreased coverage  0.000276642  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0277  CDS  NC_013162  357315  358607  1293  phosphopyruvate hydratase  YP_003140401  decreased coverage  6.9334e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0318  CDS  NC_013162  399051  400214  1164  OmpA/MotB domain protein  YP_003140442  decreased coverage  9.64378e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0362  CDS  NC_013162  453934  455805  1872  alpha amylase catalytic region  YP_003140486  decreased coverage  6.17875e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0363  CDS  NC_013162  456142  456900  759  hypothetical protein  YP_003140487  decreased coverage  1.77188e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0421  CDS  NC_013162  532245  532796  552  NusG antitermination factor  YP_003140545  decreased coverage  3.62021e-07  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0423  CDS  NC_013162  533295  533984  690  50S ribosomal protein L1  YP_003140547  decreased coverage  3.83524e-07  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0437  CDS  NC_013162  552921  554474  1554  peptidase S8/S53 subtilisin kexin sedolisin  YP_003140561  decreased coverage  3.29781e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0477  CDS  NC_013162  614291  615496  1206  GTP-binding proten HflX  YP_003140601  decreased coverage  0.00918489  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0478  CDS  NC_013162  615509  616183  675  hypothetical protein  YP_003140602  decreased coverage  0.00358452  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0642  CDS  NC_013162  797851  798816  966  hypothetical protein  YP_003140761  decreased coverage  0.000416196  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0759  CDS  NC_013162  917949  918056  108  hypothetical protein  YP_003140877  decreased coverage  6.08311e-08  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0823  CDS  NC_013162  986127  987416  1290  Peptidase M23  YP_003140940  decreased coverage  1.76405e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0824  CDS  NC_013162  987691  988110  420  hypothetical protein  YP_003140941  decreased coverage  3.51995e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0854  CDS  NC_013162  1020066  1021121  1056  hypothetical protein  YP_003140971  decreased coverage  0.0023629  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0855  CDS  NC_013162  1021147  1022223  1077  hypothetical protein  YP_003140972  decreased coverage  0.000196055  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0931  CDS  NC_013162  1082842  1084326  1485  RagB/SusD domain protein  YP_003141047  decreased coverage  0.00244516  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_0942  CDS  NC_013162  1096498  1098756  2259  hypothetical protein  YP_003141058  decreased coverage  1.87515e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1011  CDS  NC_013162  1185702  1188761  3060  Beta-galactosidase  YP_003141127  decreased coverage  0.00111283  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1021  CDS  NC_013162  1204007  1205755  1749  RagB/SusD domain protein  YP_003141137  decreased coverage  0.00103937  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1059  CDS  NC_013162  1257529  1259076  1548  hypothetical protein  YP_003141175  decreased coverage  0.00189201  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1083  CDS  NC_013162  1284578  1285297  720  hypothetical protein  YP_003141199  decreased coverage  0.00230373  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1084  CDS  NC_013162  1285307  1285942  636  peptidase M22 glycoprotease  YP_003141200  decreased coverage  0.00473352  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1085  CDS  NC_013162  1285994  1286671  678  Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase  YP_003141201  decreased coverage  0.00458554  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1088  CDS  NC_013162  1289429  1289977  549  NadR-like protein  YP_003141204  decreased coverage  0.00476458  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1183  CDS  NC_013162  1391240  1392361  1122  DNA replication and repair protein RecF  YP_003141295  decreased coverage  0.00164356  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1184  CDS  NC_013162  1392433  1392651  219  hypothetical protein  YP_003141296  decreased coverage  0.000648898  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1185  CDS  NC_013162  1392641  1392964  324  plasmid stabilization system  YP_003141297  decreased coverage  0.000764617  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1412  CDS  NC_013162  1653855  1654148  294  hypothetical protein  YP_003141519  decreased coverage  6.69331e-08  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1413  CDS  NC_013162  1654202  1654429  228  hypothetical protein  YP_003141520  decreased coverage  6.66979e-07  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1414  CDS  NC_013162  1654410  1654919  510  transferase hexapeptide repeat containing protein  YP_003141521  decreased coverage  1.09876e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1421  CDS  NC_013162  1664108  1664869  762  conserved hypothetical protein, membrane  YP_003141528  decreased coverage  0.000100005  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1551  CDS  NC_013162  1844276  1844533  258  hypothetical protein  YP_003141657  decreased coverage  0.00125991  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1552  CDS  NC_013162  1844593  1845834  1242  major facilitator superfamily MFS_1  YP_003141658  decreased coverage  0.00281859  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1554  CDS  NC_013162  1846596  1848128  1533  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase  YP_003141660  decreased coverage  0.0062608  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1686  CDS  NC_013162  2013310  2015079  1770  hypothetical protein  YP_003141792  decreased coverage  0.000237828  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1714  CDS  NC_013162  2048833  2049402  570  protein of unknown function DUF820  YP_003141820  decreased coverage  5.57218e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1715  CDS  NC_013162  2049418  2049966  549  ATP synthase F1, delta subunit  YP_003141821  decreased coverage  4.59398e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1756  CDS  NC_013162  2093422  2094810  1389  bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase  YP_003141862  decreased coverage  0.00128496  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1864  CDS  NC_013162  2236911  2237747  837  Sel1 domain protein repeat-containing protein  YP_003141970  decreased coverage  0.00318997  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_1918  CDS  NC_013162  2304909  2305355  447  transcription activator effector binding  YP_003142024  decreased coverage  0.00982966  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_2062  CDS  NC_013162  2470360  2473692  3333  TonB-dependent receptor plug  YP_003142167  decreased coverage  0.000641911  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_2063  CDS  NC_013162  2473762  2474685  924  N-acetylneuraminate lyase  YP_003142168  decreased coverage  5.71385e-07  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_2065  CDS  NC_013162  2476199  2477455  1257  Kelch repeat-containing protein  YP_003142170  decreased coverage  1.18858e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_2066  CDS  NC_013162  2477462  2478631  1170  N-acylglucosamine 2-epimerase  YP_003142171  decreased coverage  1.0406e-06  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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Coch_2144  CDS  NC_013162  2559549  2561027  1479  peptidase S41  YP_003142249  decreased coverage  1.94647e-05  n/a    Capnocytophaga ochracea DSM 7271  Bacteria 
 
 
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