75 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mpal_0001  CDS  NC_011832  442  1704  1263  orc1/cdc6 family replication initiation protein  YP_002465120  normal  decreased coverage  0.00890369  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0002  CDS  NC_011832  1710  2201  492  transcriptional regulator, AsnC family  YP_002465121  normal  decreased coverage  0.00778678  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0003  CDS  NC_011832  2211  3377  1167  aminotransferase class I and II  YP_002465122  normal  decreased coverage  0.00871395  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0004  CDS  NC_011832  3462  4652  1191  DNA methylase N-4/N-6 domain protein  YP_002465123  normal  decreased coverage  0.0090313  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0084  CDS  NC_011832  93948  95315  1368  coenzyme F420 hydrogenase, subunit alpha  YP_002465201  decreased coverage  0.0042117  normal  0.0638209  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0141  CDS  NC_011832  165399  167912  2514  putative PAS/PAC sensor protein  YP_002465257  normal  decreased coverage  0.00355903  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0142  CDS  NC_011832  168092  168352  261  hypothetical protein  YP_002465258  normal  0.559751  decreased coverage  0.00211603  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0143  CDS  NC_011832  168411  169490  1080  hypothetical protein  YP_002465259  normal  0.467996  decreased coverage  0.00277637  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0144  CDS  NC_011832  169487  171298  1812  ABC-2 type transporter  YP_002465260  normal  0.0287244  decreased coverage  0.00361496  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0145  CDS  NC_011832  171378  172265  888  ABC transporter related  YP_002465261  normal  0.0967597  decreased coverage  0.0026708  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0146  CDS  NC_011832  172626  174050  1425  phosphoesterase RecJ domain protein  YP_002465262  normal  decreased coverage  0.00331466  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0190    NC_011832  220004  220389  386      decreased coverage  0.000640357  decreased coverage  0.000257741  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0191  CDS  NC_011832  220756  221487  732  transcriptional regulator, TetR family  YP_002465301  decreased coverage  0.00113557  decreased coverage  0.000257741  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0192  CDS  NC_011832  221665  223293  1629  Amidohydrolase 3  YP_002465302  decreased coverage  0.00766802  decreased coverage  0.000327885  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0193  CDS  NC_011832  223339  224028  690  Isoprenylcysteine carboxyl methyltransferase  YP_002465303  hitchhiker  0.00375189  decreased coverage  0.000266905  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0194  CDS  NC_011832  224508  224981  474  PEBP family protein  YP_002465304  hitchhiker  0.00231088  decreased coverage  0.000228526  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0195  CDS  NC_011832  225645  226898  1254  coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein  YP_002465305  normal  0.0550447  decreased coverage  0.000288361  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0353  CDS  NC_011832  375660  376598  939  glycosyl transferase family 2  YP_002465457  decreased coverage  4.39981e-05  normal  0.42611  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0354  CDS  NC_011832  376600  377808  1209  glycosyl transferase group 1  YP_002465458  decreased coverage  7.9613e-05  normal  0.480518  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0385  CDS  NC_011832  402624  404354  1731  hypothetical protein  YP_002465483  normal  decreased coverage  0.00115615  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0386  CDS  NC_011832  404351  405313  963  hypothetical protein  YP_002465484  normal  decreased coverage  0.000945435  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0387  CDS  NC_011832  405300  406196  897  hypothetical protein  YP_002465485  normal  0.780865  decreased coverage  0.000937212  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0435  CDS  NC_011832  452549  453133  585  hypothetical protein  YP_002465532  decreased coverage  0.00412378  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0442  CDS  NC_011832  459322  460335  1014  50S ribosomal protein L3P  YP_002465539  decreased coverage  0.00631361  normal  0.320791  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0454  CDS  NC_011832  465249  465974  726  30S ribosomal protein S4e  YP_002465551  decreased coverage  0.0061334  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0558  CDS  NC_011832  551392  553017  1626  nitrogenase molybdenum-iron protein alpha chain  YP_002465654  decreased coverage  0.000289733  normal  0.238141  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0559  CDS  NC_011832  553035  553454  420  nitrogen regulatory protein P-II  YP_002465655  decreased coverage  1.46576e-05  normal  0.195853  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0560  CDS  NC_011832  553466  553792  327  nitrogen regulatory protein P-II  YP_002465656  decreased coverage  1.21582e-05  normal  0.190024  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0561  CDS  NC_011832  553810  554640  831  nitrogenase iron protein  YP_002465657  decreased coverage  3.68653e-05  normal  0.199489  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_0584  CDS  NC_011832  577916  578311  396  transcriptional regulator, TrmB  YP_002465678  decreased coverage  2.12991e-05  normal  0.151075  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0689  CDS  NC_011832  684697  686625  1929  ATPase  YP_002465779  decreased coverage  0.00061638  normal  0.134413  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0722  CDS  NC_011832  719454  719915  462  hypothetical protein  YP_002465811  decreased coverage  0.00610528  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0723  CDS  NC_011832  720044  720643  600  ThiJ/PfpI domain protein  YP_002465812  decreased coverage  0.00286561  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0776  CDS  NC_011832  791115  792197  1083  major facilitator superfamily MFS_1  YP_002465861  normal  0.368267  decreased coverage  0.00232333  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0794  CDS  NC_011832  808363  808539  177  hypothetical protein  YP_002465879  decreased coverage  0.00623403  normal  0.421702  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0832  CDS  NC_011832  856675  857724  1050  hypothetical protein  YP_002465917  decreased coverage  0.00050056  normal  0.312706  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0833  CDS  NC_011832  858000  859355  1356  hypothetical protein  YP_002465918  decreased coverage  0.000168293  normal  0.183583  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_0907  CDS  NC_011832  932683  935220  2538  Carbohydrate binding family 6  YP_002465984  decreased coverage  0.00955406  normal  0.403954  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1074  CDS  NC_011832  1112781  1113302  522  50S ribosomal protein L10e  YP_002466143  decreased coverage  0.00939806  normal  0.46194  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1083  CDS  NC_011832  1121728  1122255  528  nitroreductase  YP_002466152  decreased coverage  0.000705077  normal  0.264169  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1084  CDS  NC_011832  1122268  1122606  339  hypothetical protein  YP_002466153  decreased coverage  0.000536212  normal  0.432812  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1085  CDS  NC_011832  1122603  1123487  885  PfkB domain protein  YP_002466154  decreased coverage  0.000428719  normal  0.482766  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_1086  CDS  NC_011832  1123491  1124147  657  ATP binding protein  YP_002466155  decreased coverage  0.00130947  normal  0.155895  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1088  CDS  NC_011832  1125880  1126041  162  hypothetical protein  YP_002466157  decreased coverage  0.000553843  normal  0.250187  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1089  CDS  NC_011832  1126091  1126498  408  hemerythrin-like metal-binding protein  YP_002466158  decreased coverage  0.000902332  normal  0.270492  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1090  CDS  NC_011832  1126861  1127826  966  hypothetical protein  YP_002466159  decreased coverage  0.00283922  normal  0.307044  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1206  CDS  NC_011832  1239764  1240849  1086  thiamine biosynthesis/tRNA modification protein ThiI  YP_002466267  decreased coverage  0.00578978  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1285  CDS  NC_011832  1313256  1313738  483  blue (type 1) copper domain protein  YP_002466342  decreased coverage  0.00926842  normal  0.753246  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1371  CDS  NC_011832  1410483  1411646  1164  aminotransferase class V  YP_002466425  decreased coverage  0.00447816  normal  0.862029  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1372  CDS  NC_011832  1411651  1413453  1803  protein of unknown function DUF262  YP_002466426  decreased coverage  0.00399856  normal  0.871064  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1470  CDS  NC_011832  1519320  1520126  807  response regulator receiver protein  YP_002466515  decreased coverage  0.00118197  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1471  CDS  NC_011832  1520156  1520593  438  hypothetical protein  YP_002466516  decreased coverage  0.000124832  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1472  CDS  NC_011832  1520593  1520802  210  transcriptional regulator, XRE family  YP_002466517  decreased coverage  0.000374742  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1508  CDS  NC_011832  1551764  1552414  651  NADPH-dependent FMN reductase  YP_002466546  normal  0.25275  decreased coverage  0.00823646  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1509    NC_011832  1552753  1553914  1162      normal  0.719647  decreased coverage  0.00853112  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1714  CDS  NC_011832  1785653  1787479  1827  K potassium transporter  YP_002466744  decreased coverage  0.00063361  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1942  CDS  NC_011832  2058699  2059202  504  hypothetical protein  YP_002466969  decreased coverage  0.0030392  normal  0.22937  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1943  CDS  NC_011832  2059290  2060441  1152  protein of unknown function DUF362  YP_002466970  decreased coverage  0.00286214  normal  0.07931  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1962  CDS  NC_011832  2083155  2083622  468  protein of unknown function DUF82  YP_002466988  unclonable  3.51454e-06  decreased coverage  0.00501017  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_1963  CDS  NC_011832  2083660  2084664  1005  Radical SAM domain protein  YP_002466989  normal  0.0105086  decreased coverage  0.00565461  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_2070  CDS  NC_011832  2192413  2194821  2409  Carbohydrate binding family 6  YP_002467092  decreased coverage  0.002169  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2138  CDS  NC_011832  2272626  2273582  957  hypothetical protein  YP_002467159  decreased coverage  0.00938098  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2191  CDS  NC_011832  2330830  2331927  1098  CDP-glucose 4,6-dehydratase  YP_002467210  decreased coverage  0.00831743  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
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Mpal_2243  CDS  NC_011832  2392669  2392935  267  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002467259  decreased coverage  0.000430291  normal  0.0350481  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2382  CDS  NC_011832  2527183  2527584  402  30S ribosomal protein S9P  YP_002467386  decreased coverage  1.63984e-05  normal  0.637702  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2547    NC_011832  2676531  2676671  141      decreased coverage  0.000441101  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2551  CDS  NC_011832  2679234  2680757  1524  P4 family phage/plasmid primase  YP_002467546  decreased coverage  0.00685324  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2552  CDS  NC_011832  2681043  2681840  798  hypothetical protein  YP_002467547  decreased coverage  0.00146174  normal  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2630  CDS  NC_011832  2753909  2756701  2793  PKD domain containing protein  YP_002467621  normal  0.668358  decreased coverage  0.0001414  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2660  CDS  NC_011832  2787108  2788316  1209  phosphoesterase RecJ domain protein  YP_002467647  decreased coverage  0.000971768  normal  0.887166  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2661  CDS  NC_011832  2788332  2788790  459  30S ribosomal protein S15P  YP_002467648  decreased coverage  0.000175245  normal  0.779826  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2662  CDS  NC_011832  2789095  2789514  420  TonB box domain protein  YP_002467649  decreased coverage  0.000144725  normal  0.74286  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_2664  CDS  NC_011832  2789905  2790543  639  small GTP-binding protein  YP_002467651  decreased coverage  0.000173682  normal  0.819778  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_R0003  tRNA  NC_011832  172413  172489  77  tRNA-Lys    normal  0.237532  decreased coverage  0.00216648  Methanosphaerula palustris E1-9c  Archaea 
 
 
-
 
Mpal_R0028  tRNA  NC_011832  1126651  1126735  85  tRNA-Leu    decreased coverage  0.000463035  normal  0.261608  Methanosphaerula palustris E1-9c  Archaea 
 
 
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