31 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rmar_0306  CDS  NC_013501  334174  334428  255  ribosomal protein S20  YP_003289599  decreased coverage  1.67926e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0307  CDS  NC_013501  334554  335450  897  Peptidase M23  YP_003289600  decreased coverage  9.88851e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0330  CDS  NC_013501  362795  365920  3126  TonB-dependent outer membrane receptor precursor  YP_003289623  decreased coverage  0.000673436  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0352  CDS  NC_013501  388410  389453  1044  transcriptional regulator, LacI family  YP_003289644  decreased coverage  0.00162695  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0403  CDS  NC_013501  446721  447797  1077  TIM-barrel protein, nifR3 family  YP_003289695  decreased coverage  1.89855e-06  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0405  CDS  NC_013501  448827  449468  642  Methyltransferase type 12  YP_003289697  decreased coverage  7.1012e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0435  CDS  NC_013501  479256  480221  966  hypothetical protein  YP_003289725  decreased coverage  6.27827e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0536  CDS  NC_013501  608068  610332  2265  glycoside hydrolase family 3 domain protein  YP_003289825  decreased coverage  0.0012986  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0584  CDS  NC_013501  662745  663221  477  (2Fe-2S)-binding domain protein  YP_003289872  decreased coverage  1.317e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_0585  CDS  NC_013501  663218  665452  2235  aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein  YP_003289873  decreased coverage  0.000289251  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1081  CDS  NC_013501  1249172  1251526  2355  glycoside hydrolase family 3 domain protein  YP_003290361  decreased coverage  0.000550104  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1082  CDS  NC_013501  1251670  1252290  621  hypothetical protein  YP_003290362  decreased coverage  0.00041216  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1147  CDS  NC_013501  1327495  1328487  993  glycosyl transferase family 2  YP_003290425  decreased coverage  1.20628e-06  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1333  CDS  NC_013501  1561496  1562539  1044  transcriptional regulator, LacI family  YP_003290610  decreased coverage  0.00834702  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1499  CDS  NC_013501  1750526  1752511  1986  acetate/CoA ligase  YP_003290774  decreased coverage  0.00738243  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1632  CDS  NC_013501  1892077  1893342  1266  CRISPR-associated protein, TIGR02710 family  YP_003290906  decreased coverage  1.23008e-06  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1633  CDS  NC_013501  1893345  1894802  1458  CRISPR-associated RAMP protein, Csm5 family  YP_003290907  decreased coverage  1.63126e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_1722  CDS  NC_013501  1996510  1998192  1683  carboxyl-terminal protease  YP_003290994  decreased coverage  0.000358148  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2255  CDS  NC_013501  2619664  2621787  2124  small GTP-binding protein  YP_003291522  decreased coverage  3.13892e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2296  CDS  NC_013501  2659706  2660356  651  putative transcriptional regulator  YP_003291563  decreased coverage  3.58822e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2509  CDS  NC_013501  2919536  2920555  1020  UDP-N-acetylenolpyruvoylglucosamine reductase  YP_003291773  decreased coverage  1.05571e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2524  CDS  NC_013501  2934753  2935424  672  putative cytoplasmic protein  YP_003291788  decreased coverage  3.45369e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2707  CDS  NC_013501  3138201  3138614  414  hypothetical protein  YP_003291966  decreased coverage  0.000930453  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2708  CDS  NC_013501  3138611  3139594  984  S-adenosyl-methyltransferase MraW  YP_003291967  decreased coverage  0.00108828  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2764  CDS  NC_013501  3205616  3206491  876  molybdopterin dehydrogenase FAD-binding protein  YP_003292022  decreased coverage  2.20689e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2783  CDS  NC_013501  3230203  3231093  891  manganese containing catalase  YP_003292040  decreased coverage  0.00681002  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2784  CDS  NC_013501  3231182  3232297  1116  PepSY-associated TM helix domain protein  YP_003292041  decreased coverage  0.000955959  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2821  CDS  NC_013502  22111  23535  1425  ATPase  YP_003292076  decreased coverage  0.000929757  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_2828  CDS  NC_013502  33405  33581  177  hypothetical protein  YP_003292083  decreased coverage  8.01961e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_R0036  tRNA  NC_013501  2251231  2251304  74  tRNA-His    decreased coverage  7.13799e-05  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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Rmar_R0049  tRNA  NC_013501  3052803  3052879  77  tRNA-Val    decreased coverage  4.00511e-07  n/a    Rhodothermus marinus DSM 4252  Bacteria 
 
 
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