59 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dtur_0094  CDS  NC_011661  95336  96502  1167  ABC-2 type transporter  YP_002352046  decreased coverage  0.00282283  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0095  CDS  NC_011661  96499  97431  933  ABC transporter related  YP_002352047  decreased coverage  6.02484e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0214  CDS  NC_011661  209703  211532  1830  extracellular solute-binding protein family 5  YP_002352157  decreased coverage  4.34403e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0273  CDS  NC_011661  278990  280882  1893  extracellular solute-binding protein family 5  YP_002352213  decreased coverage  1.42627e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0414  CDS  NC_011661  418424  419428  1005  rhamnose ABC transporter, periplasmic rhamnose-binding protein  YP_002352332  decreased coverage  2.39184e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0422  CDS  NC_011661  428146  428943  798  sorbitol-6-phosphate dehydrogenase  YP_002352339  decreased coverage  0.0026318  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0436  CDS  NC_011661  442760  443935  1176  lipoprotein, putative  YP_002352352  decreased coverage  1.32569e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0509  CDS  NC_011661  515399  516406  1008  transcriptional regulator, LacI family  YP_002352416  decreased coverage  5.7395e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0510  CDS  NC_011661  516638  516874  237  SirA family protein  YP_002352417  decreased coverage  5.86624e-10  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0540  CDS  NC_011661  539224  539391  168  hypothetical protein  YP_002352444  decreased coverage  4.14859e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0541  CDS  NC_011661  539425  540048  624  iron (metal) dependent repressor, DtxR family  YP_002352445  decreased coverage  5.08383e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0549  CDS  NC_011661  546751  547644  894  binding-protein-dependent transport systems inner membrane component  YP_002352453  decreased coverage  4.88765e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0561  CDS  NC_011661  562015  562641  627  redox-sensing transcriptional repressor Rex  YP_002352465  decreased coverage  2.11824e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0599  CDS  NC_011661  597430  599172  1743  polysaccharide export protein  YP_002352501  decreased coverage  5.41966e-07  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0645  CDS  NC_011661  648433  649281  849  lipoprotein, putative  YP_002352544  decreased coverage  2.25568e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0646  CDS  NC_011661  649443  650249  807  Myo-inositol catabolism IolB domain protein  YP_002352545  decreased coverage  1.77298e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0648  CDS  NC_011661  651120  653549  2430  glycosyl transferase 36  YP_002352547  decreased coverage  7.2507e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0799  CDS  NC_011661  820492  821280  789  metallophosphoesterase  YP_002352694  decreased coverage  3.66477e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0800  CDS  NC_011661  821326  821589  264  Stage V sporulation protein S  YP_002352695  decreased coverage  4.55858e-07  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0803  CDS  NC_011661  822581  823177  597  Thymidine kinase  YP_002352698  decreased coverage  4.14594e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0843  CDS  NC_011661  865689  866360  672  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002352738  decreased coverage  4.67073e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0899  CDS  NC_011661  931061  933745  2685  ATPase AAA-2 domain protein  YP_002352794  decreased coverage  4.1024e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0938  CDS  NC_011661  967833  969050  1218  acetate kinase  YP_002352833  decreased coverage  9.04206e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0974  CDS  NC_011661  1002457  1005669  3213  DNA-directed RNA polymerase, beta subunit  YP_002352868  decreased coverage  0.000799261  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0975  CDS  NC_011661  1005689  1009972  4284  DNA-directed RNA polymerase, beta' subunit  YP_002352869  decreased coverage  0.00330358  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0976  CDS  NC_011661  1010074  1010460  387  30S ribosomal protein S12  YP_002352870  decreased coverage  3.91683e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_0977  CDS  NC_011661  1010460  1010930  471  30S ribosomal protein S7  YP_002352871  decreased coverage  5.22075e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1011  CDS  NC_011661  1029838  1030701  864  ABC transporter related  YP_002352905  decreased coverage  8.09706e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1069  CDS  NC_011661  1087458  1087703  246  protein of unknown function DUF156  YP_002352962  decreased coverage  5.53897e-10  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1070  CDS  NC_011661  1087868  1088692  825  hypothetical protein  YP_002352963  decreased coverage  1.85263e-08  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1082  CDS  NC_011661  1102954  1103640  687  protein of unknown function DUF72  YP_002352975  decreased coverage  0.00357332  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1083  CDS  NC_011661  1103808  1105232  1425  transcription termination factor Rho  YP_002352976  decreased coverage  2.88858e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
-
 
Dtur_1115  CDS  NC_011661  1135093  1135686  594  lipoprotein, putative  YP_002353008  decreased coverage  0.000135293  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1120  CDS  NC_011661  1140318  1140941  624  ATP phosphoribosyltransferase  YP_002353013  decreased coverage  0.0051098  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1243  CDS  NC_011661  1261941  1263158  1218  cell division protein FtsA  YP_002353135  decreased coverage  0.00629295  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1258  CDS  NC_011661  1277286  1277999  714  protein of unknown function DUF164  YP_002353150  decreased coverage  6.28919e-09  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1280  CDS  NC_011661  1298147  1298401  255  50S ribosomal protein L27  YP_002353172  decreased coverage  0.00391085  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1281  CDS  NC_011661  1298422  1298739  318  50S ribosomal protein L21  YP_002353173  decreased coverage  0.00406184  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1288  CDS  NC_011661  1306067  1307272  1206  lipoprotein, putative  YP_002353180  decreased coverage  4.9717e-08  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1289  CDS  NC_011661  1307622  1308833  1212  lipoprotein, putative  YP_002353181  decreased coverage  3.09477e-07  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1362  CDS  NC_011661  1377372  1377812  441  single-strand binding protein  YP_002353250  decreased coverage  1.24693e-10  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1363  CDS  NC_011661  1377816  1378109  294  30S ribosomal protein S6  YP_002353251  decreased coverage  6.20601e-10  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1399  CDS  NC_011661  1413521  1414315  795  septum site-determining protein MinD  YP_002353287  decreased coverage  3.34804e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1403  CDS  NC_011661  1417068  1417874  807  Rod shape-determining protein MreC  YP_002353291  decreased coverage  4.00857e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1404  CDS  NC_011661  1417855  1418901  1047  rod shape-determining protein MreB  YP_002353292  decreased coverage  1.35004e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1407  CDS  NC_011661  1420339  1421079  741  glycosyl transferase, WecB/TagA/CpsF family  YP_002353295  decreased coverage  1.75503e-06  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1480  CDS  NC_011661  1489927  1492398  2472  ATPase AAA-2 domain protein  YP_002353368  decreased coverage  0.0038131  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1512  CDS  NC_011661  1524643  1525710  1068  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_002353400  decreased coverage  0.00064667  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1514  CDS  NC_011661  1526675  1526950  276  histone family protein DNA-binding protein  YP_002353402  decreased coverage  1.08882e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1526  CDS  NC_011661  1537733  1539823  2091  DNA topoisomerase I  YP_002353414  decreased coverage  0.000864041  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1528  CDS  NC_011661  1540984  1542306  1323  Xanthine/uracil/vitamin C permease  YP_002353416  decreased coverage  0.000884717  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1529  CDS  NC_011661  1542335  1543855  1521  Mg chelatase, subunit ChlI  YP_002353417  decreased coverage  0.00744934  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1547  CDS  NC_011661  1558163  1560070  1908  DNA gyrase, B subunit  YP_002353435  decreased coverage  0.00189026  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1558  CDS  NC_011661  1567883  1569103  1221  hypothetical protein  YP_002353446  decreased coverage  0.00439745  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1567  CDS  NC_011661  1581893  1582327  435  ferric uptake regulator, Fur family  YP_002353455  decreased coverage  4.42181e-11  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1707  CDS  NC_011661  1724821  1725804  984  binding-protein-dependent transport systems inner membrane component  YP_002353593  decreased coverage  3.70081e-08  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1715  CDS  NC_011661  1733040  1736153  3114  Endo-1,4-beta-xylanase  YP_002353601  decreased coverage  8.95355e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_1799  CDS  NC_011661  1837005  1838345  1341  beta-galactosidase  YP_002353685  decreased coverage  1.88458e-05  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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Dtur_R0018  tRNA  NC_011661  1087768  1087844  77  tRNA-Arg    decreased coverage  1.34233e-11  n/a    Dictyoglomus turgidum DSM 6724  Bacteria 
 
 
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