74 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mrub_0001  CDS  NC_013946  37  1356  1320  chromosomal replication initiator protein DnaA  YP_003505803  decreased coverage  1.09214e-07  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0110  CDS  NC_013946  87023  88699  1677  RNA binding S1 domain-containing protein  YP_003505911  decreased coverage  4.33742e-07  normal  0.284586  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0111  CDS  NC_013946  88965  89672  708  molybdopterin converting factor, subunit 1  YP_003505912  decreased coverage  1.29996e-08  normal  0.207876  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0143  CDS  NC_013946  119526  119948  423  MarR family transcriptional regulator  YP_003505943  decreased coverage  0.000387335  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0287  CDS  NC_013946  252387  253388  1002  Endo-1,4-beta-xylanase  YP_003506085  decreased coverage  2.8358e-05  normal  0.661075  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0289  CDS  NC_013946  254728  256326  1599  xylan 1,4-beta-xylosidase  YP_003506087  decreased coverage  2.1727e-05  normal  0.556687  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0416  CDS  NC_013946  393643  394725  1083  TRAP dicarboxylate transporter subunit DctP  YP_003506213  decreased coverage  4.42775e-07  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0417  CDS  NC_013946  394865  395422  558  Tripartite ATP-independent periplasmic transporter DctQ component  YP_003506214  decreased coverage  3.70406e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0437  CDS  NC_013946  417621  419183  1563  glycerol kinase  YP_003506234  hitchhiker  1.12542e-06  decreased coverage  0.00471602  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0499  CDS  NC_013946  485893  486333  441  hypothetical protein  YP_003506294  decreased coverage  0.000308399  normal  0.0403378  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0537  CDS  NC_013946  516768  518222  1455  hypothetical protein  YP_003506332  decreased coverage  0.000153327  normal  0.0905818  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0574  CDS  NC_013946  544731  545159  429  hypothetical protein  YP_003506367  decreased coverage  0.00568531  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0575  CDS  NC_013946  545206  545481  276  zinc finger SWIM domain-containing protein  YP_003506368  decreased coverage  0.00502278  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0576  CDS  NC_013946  545579  546091  513  hypothetical protein  YP_003506369  decreased coverage  0.00845502  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0623  CDS  NC_013946  601115  602248  1134  ABC-3 protein  YP_003506410  decreased coverage  0.00133285  normal  0.138429  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0661  CDS  NC_013946  642763  643602  840  extracellular solute-binding protein family 3  YP_003506448  decreased coverage  0.000289878  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_0785  CDS  NC_013946  768624  769379  756  FeS assembly ATPase SufC  YP_003506571  decreased coverage  0.00319351  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1013  CDS  NC_013946  1004292  1006820  2529  PKD domain-containing protein  YP_003506798  decreased coverage  0.000167268  normal  0.298358  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1088  CDS  NC_013946  1093534  1093830  297  chaperonin Cpn10  YP_003506872  decreased coverage  4.66109e-09  normal  0.037414  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1089  CDS  NC_013946  1093877  1095514  1638  chaperonin GroEL  YP_003506873  decreased coverage  3.83154e-07  normal  0.0318123  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1117  CDS  NC_013946  1122971  1123672  702  short-chain dehydrogenase/reductase SDR  YP_003506901  decreased coverage  2.23483e-07  normal  0.996665  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1118  CDS  NC_013946  1123928  1125130  1203  extracellular solute-binding protein family 1  YP_003506902  decreased coverage  7.04817e-08  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1143  CDS  NC_013946  1155276  1157009  1734  extracellular solute-binding protein family 5  YP_003506926  decreased coverage  0.0057674  normal  0.283725  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1144  CDS  NC_013946  1157065  1158261  1197  binding-protein-dependent transport systems inner membrane component  YP_003506927  decreased coverage  0.00903632  normal  0.254624  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1174  CDS  NC_013946  1187061  1187585  525  50S ribosomal protein L10  YP_003506957  decreased coverage  9.20712e-09  normal  0.67375  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1185  CDS  NC_013946  1195217  1196560  1344  beta-lactamase domain-containing protein  YP_003506968  decreased coverage  6.45588e-05  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1211  CDS  NC_013946  1223164  1224927  1764  oligoendopeptidase pepF/M3 family  YP_003506994  decreased coverage  8.02852e-07  normal  0.797975  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1212  CDS  NC_013946  1225013  1225207  195  hypothetical protein  YP_003506995  decreased coverage  3.56158e-09  normal  0.769838  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1330  CDS  NC_013946  1363917  1364888  972  3,4-dihydroxyphenylacetate 2,3-dioxygenase  YP_003507112  decreased coverage  0.00370431  normal  0.041902  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1465  CDS  NC_013946  1493032  1493439  408  hypothetical protein  YP_003507247  decreased coverage  1.17055e-07  normal  0.423534  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1466  CDS  NC_013946  1493595  1495886  2292  3-hydroxyacyl-CoA dehydrogenase NAD-binding protein  YP_003507248  decreased coverage  7.12862e-06  normal  0.600196  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1491  CDS  NC_013946  1522630  1524138  1509  lysyl-tRNA synthetase  YP_003507273  normal  decreased coverage  0.00494369  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1536  CDS  NC_013946  1572191  1572631  441  50S ribosomal protein L13  YP_003507318  decreased coverage  6.33501e-09  normal  0.222947  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1553  CDS  NC_013946  1587334  1587771  438  hypothetical protein  YP_003507335  normal  decreased coverage  0.000880157  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1554  CDS  NC_013946  1587835  1588854  1020  integrase family protein  YP_003507336  normal  0.86595  decreased coverage  0.00111318  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1556  CDS  NC_013946  1589329  1590939  1611  S-layer domain-containing protein  YP_003507338  normal  decreased coverage  0.0013554  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1664  CDS  NC_013946  1698923  1699645  723  GntR family transcriptional regulator  YP_003507445  decreased coverage  0.00697714  normal  0.132461  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1823  CDS  NC_013946  1875316  1875585  270  30S ribosomal protein S15  YP_003507601  decreased coverage  2.43315e-07  normal  0.181324  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1824  CDS  NC_013946  1875656  1876813  1158  major facilitator superfamily MFS_1  YP_003507602  decreased coverage  4.33141e-06  normal  0.0989924  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1891  CDS  NC_013946  1950608  1950823  216  hypothetical protein  YP_003507668  decreased coverage  2.24996e-05  hitchhiker  0.00253579  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1909  CDS  NC_013946  1968258  1969943  1686  acetolactate synthase large subunit, biosynthetic type  YP_003507686  decreased coverage  4.25472e-07  hitchhiker  7.17525e-05  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1910  CDS  NC_013946  1970130  1971119  990  FAD-dependent pyridine nucleotide-disulfide oxidoreductase  YP_003507687  decreased coverage  3.26035e-06  hitchhiker  5.49651e-05  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1931  CDS  NC_013946  1988150  1988629  480  hypothetical protein  YP_003507708  hitchhiker  0.000150217  decreased coverage  4.68182e-10  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1932  CDS  NC_013946  1988669  1989847  1179  NusA antitermination factor  YP_003507709  unclonable  1.67668e-09  decreased coverage  7.52271e-10  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_1933    NC_013946  1989872  1990051  180      decreased coverage  1.25841e-08  hitchhiker  3.60132e-09  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2089  CDS  NC_013946  2129476  2130357  882  binding-protein-dependent transport systems inner membrane component  YP_003507863  decreased coverage  2.40561e-07  normal  0.90976  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2146  CDS  NC_013946  2198056  2198514  459  hypothetical protein  YP_003507920  decreased coverage  0.00273056  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2147  CDS  NC_013946  2198562  2199821  1260  hypothetical protein  YP_003507921  decreased coverage  0.0010107  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2229  CDS  NC_013946  2279507  2280073  567  metal dependent phosphohydrolase  YP_003508002  decreased coverage  0.00246967  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2277  CDS  NC_013946  2327094  2328941  1848  extracellular solute-binding protein family 5  YP_003508050  hitchhiker  0.00527261  decreased coverage  2.10766e-10  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2360  CDS  NC_013946  2409871  2411793  1923  heavy metal translocating P-type ATPase  YP_003508131  decreased coverage  6.21697e-07  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2391  CDS  NC_013946  2445374  2446375  1002  TAXI family TRAP transporter solute receptor  YP_003508162  decreased coverage  1.15458e-05  normal  0.82394  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2443  CDS  NC_013946  2493773  2494687  915  periplasmic binding protein  YP_003508214  decreased coverage  9.10512e-07  normal  0.674129  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2444  CDS  NC_013946  2494729  2495058  330  Antibiotic biosynthesis monooxygenase  YP_003508215  decreased coverage  9.4626e-07  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2445  CDS  NC_013946  2495332  2495928  597  BioY protein  YP_003508216  decreased coverage  2.83482e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2536  CDS  NC_013946  2583033  2583761  729  GntR family transcriptional regulator  YP_003508306  decreased coverage  0.00251581  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2537  CDS  NC_013946  2583901  2585058  1158  hypothetical protein  YP_003508307  decreased coverage  0.00283871  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2558  CDS  NC_013946  2604262  2605239  978  TRAP dicarboxylate transporter subunit DctP  YP_003508328  decreased coverage  1.08386e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2559  CDS  NC_013946  2605289  2605747  459  Tripartite ATP-independent periplasmic transporter DctQ component  YP_003508329  decreased coverage  1.86717e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2587  CDS  NC_013946  2635477  2638116  2640  replicative DNA helicase  YP_003508357  decreased coverage  0.00388825  normal  0.462592  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2588  CDS  NC_013946  2638355  2639098  744  ABC transporter-like protein  YP_003508358  decreased coverage  7.79589e-05  normal  0.524801  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2608  CDS  NC_013946  2650266  2650595  330  50S ribosomal protein L24  YP_003508378  decreased coverage  3.38096e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2623  CDS  NC_013946  2659929  2660399  471  30S ribosomal protein S7  YP_003508393  decreased coverage  0.000189797  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2624  CDS  NC_013946  2660447  2660863  417  30S ribosomal protein S12  YP_003508394  decreased coverage  5.52514e-05  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2659  CDS  NC_013946  2697310  2698314  1005  binding-protein-dependent transport systems inner membrane component  YP_003508429  normal  decreased coverage  0.000955673  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2660  CDS  NC_013946  2698385  2699269  885  binding-protein-dependent transport systems inner membrane component  YP_003508430  normal  decreased coverage  0.00097283  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_2689  CDS  NC_013946  2724310  2725497  1188  Extracellular ligand-binding receptor  YP_003508458  decreased coverage  3.31787e-06  normal  0.185218  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_3012  CDS  NC_013946  3053644  3054024  381  CRISPR-associated protein Cas2  YP_003508776  normal  0.0235864  decreased coverage  0.00725817  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_3013  CDS  NC_013946  3053978  3054940  963  CRISPR-associated protein Cas1  YP_003508777  hitchhiker  0.00425226  decreased coverage  0.00852288  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_3019  CDS  NC_013946  3058505  3060055  1551  Cse1 family CRISPR-associated protein  YP_003508783  decreased coverage  3.06277e-06  normal  0.0835975  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_R0005  rRNA  NC_013946  256488  257964  1477  16S ribosomal RNA    decreased coverage  1.46782e-05  normal  0.725323  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_R0027  tRNA  NC_013946  1194756  1194831  76  tRNA-Gly    decreased coverage  1.74629e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_R0028  tRNA  NC_013946  1194904  1194989  86  tRNA-Tyr    decreased coverage  2.49872e-07  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Mrub_R0029  tRNA  NC_013946  1194993  1195068  76  tRNA-Thr    decreased coverage  1.38088e-06  normal  Meiothermus ruber DSM 1279  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>