93 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
YPK_0225  CDS  NC_010465  263453  263974  522  shikimate kinase I  YP_001718991  decreased coverage  7.52096e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0277  CDS  NC_010465  313972  316080  2109  elongation factor G  YP_001719043  decreased coverage  1.12388e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0297  CDS  NC_010465  326088  326480  393  30S ribosomal protein S8  YP_001719063  decreased coverage  7.47182e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0323  CDS  NC_010465  343731  343850  120  hypothetical protein  YP_001719089  decreased coverage  3.50586e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0330  CDS  NC_010465  353606  353740  135  hypothetical protein  YP_001719094  decreased coverage  1.0692e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0332  CDS  NC_010465  354371  355555  1185  elongation factor Tu  YP_001719095  decreased coverage  0.000132948  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0427  CDS  NC_010465  466708  467916  1209  transposase mutator type  YP_001719183  decreased coverage  0.00329499  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0453  CDS  NC_010465  493086  494051  966  tRNA-dihydrouridine synthase B  YP_001719209  decreased coverage  0.000154281  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0523  CDS  NC_010465  571927  573054  1128  AFG1 family ATPase  YP_001719279  decreased coverage  2.32389e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0636  CDS  NC_010465  695036  695251  216  30S ribosomal protein S21  YP_001719392  decreased coverage  1.59667e-11  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0642  CDS  NC_010465  700704  701324  621  putative signal transduction protein  YP_001719398  decreased coverage  8.17142e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0706  CDS  NC_010465  768563  769333  771  flagellar biosynthesis protein FliP  YP_001719460  decreased coverage  0.00108182  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0707  CDS  NC_010465  769330  769743  414  flagellar motor switch protein FliN  YP_001719461  decreased coverage  0.00348203  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0853  CDS  NC_010465  975832  976911  1080  fructose-bisphosphate aldolase  YP_001719607  decreased coverage  0.000607059  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0861  CDS  NC_010465  984740  985069  330  Z-ring-associated protein  YP_001719615  decreased coverage  4.55122e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1066  CDS  NC_010465  1204135  1204860  726  30S ribosomal protein S2  YP_001719820  decreased coverage  0.00351639  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1076  CDS  NC_010465  1215189  1216211  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001719830  decreased coverage  1.02577e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1077  CDS  NC_010465  1216369  1216899  531  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001719831  decreased coverage  6.62978e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1097  CDS  NC_010465  1235245  1235811  567  D,D-heptose 1,7-bisphosphate phosphatase  YP_001719851  decreased coverage  1.27876e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1123  CDS  NC_010465  1262380  1262718  339  hypothetical protein  YP_001719874  decreased coverage  3.10179e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1151  CDS  NC_010465  1287946  1288473  528  replication initiation regulator SeqA  YP_001719902  decreased coverage  1.55499e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1266  CDS  NC_010465  1395482  1395703  222  hypothetical protein  YP_001720017  decreased coverage  2.32734e-11  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1267  CDS  NC_010465  1395703  1395828  126  hypothetical protein  YP_001720018  decreased coverage  1.074e-11  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1274  CDS  NC_010465  1402239  1403012  774  RNA methyltransferase  YP_001720025  decreased coverage  2.71019e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1275  CDS  NC_010465  1403105  1403662  558  DNA-binding transcriptional regulator IscR  YP_001720026  decreased coverage  1.4653e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1431  CDS  NC_010465  1580900  1581886  987  cell division protein ZipA  YP_001720178  decreased coverage  1.15639e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1432  CDS  NC_010465  1581977  1583989  2013  NAD-dependent DNA ligase LigA  YP_001720179  decreased coverage  2.69504e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1520  CDS  NC_010465  1681956  1683179  1224  3-oxoacyl-(acyl carrier protein) synthase I  YP_001720266  decreased coverage  3.39605e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1545  CDS  NC_010465  1706860  1707408  549  NUDIX hydrolase  YP_001720291  decreased coverage  2.33987e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1707  CDS  NC_010465  1894972  1896174  1203  outer membrane-specific lipoprotein transporter subunit LolC  YP_001720453  decreased coverage  1.04309e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1739  CDS  NC_010465  1924556  1927756  3201  beta-D-galactosidase  YP_001720485  decreased coverage  0.000361485  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1784  CDS  NC_010465  1981388  1982269  882  heat shock protein HtpX  YP_001720528  decreased coverage  0.000381435  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1813  CDS  NC_010465  2012337  2013221  885  ABC-3 protein  YP_001720557  decreased coverage  0.00569074  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1820  CDS  NC_010465  2018687  2020615  1929  threonyl-tRNA synthetase  YP_001720564  decreased coverage  0.000360561  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1821  CDS  NC_010465  2020820  2021170  351  translation initiation factor IF-3  YP_001720565  decreased coverage  4.26207e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2012  CDS  NC_010465  2240379  2241080  702  electron transport complex RsxE subunit  YP_001720752  decreased coverage  0.00017811  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2027  CDS  NC_010465  2255767  2256078  312  hypothetical protein  YP_001720767  decreased coverage  1.38978e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2088  CDS  NC_010465  2316138  2318066  1929  DNA topoisomerase III  YP_001720827  decreased coverage  0.00112487  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2096  CDS  NC_010465  2325008  2326003  996  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_001720835  decreased coverage  1.44156e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2121  CDS  NC_010465  2351965  2352651  687  septum formation inhibitor  YP_001720860  decreased coverage  0.000192978  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2140  CDS  NC_010465  2371491  2372447  957  high-affinity zinc transporter periplasmic component  YP_001720879  decreased coverage  2.51275e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2141  CDS  NC_010465  2372520  2373281  762  high-affinity zinc transporter ATPase  YP_001720880  decreased coverage  5.23948e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2276  CDS  NC_010465  2529944  2530684  741  pili assembly chaperone  YP_001721006  decreased coverage  0.00485473  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2291  CDS  NC_010465  2540460  2540798  339  transposase  YP_001721021  decreased coverage  0.0059921  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2311  CDS  NC_010465  2555823  2556014  192  hypothetical protein  YP_001721041  decreased coverage  3.63539e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2312  CDS  NC_010465  2556027  2556230  204  putative DNA-binding protein  YP_001721042  decreased coverage  2.9822e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2354  CDS  NC_010465  2587516  2588064  549  phosphatidylglycerophosphate synthetase  YP_001721084  decreased coverage  3.05434e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2649  CDS  NC_010465  2911078  2912160  1083  porin  YP_001721379  decreased coverage  4.0387e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2668  CDS  NC_010465  2936501  2938174  1674  30S ribosomal protein S1  YP_001721398  decreased coverage  1.12537e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2685  CDS  NC_010465  2960129  2964061  3933  cell divisionFtsK/SpoIIIE  YP_001721415  decreased coverage  0.00501186  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2690  CDS  NC_010465  2970579  2971289  711  leucyl/phenylalanyl-tRNA--protein transferase  YP_001721420  decreased coverage  3.98138e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2692  CDS  NC_010465  2972071  2974347  2277  ATP-dependent Clp protease ATP-binding subunit  YP_001721422  decreased coverage  8.85828e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2720  CDS  NC_010465  3001413  3002504  1092  periplasmic binding protein  YP_001721450  decreased coverage  2.54593e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2765  CDS  NC_010465  3050949  3051404  456  NUDIX hydrolase  YP_001721495  decreased coverage  5.22672e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2797  CDS  NC_010465  3088213  3088440  228  hypothetical protein  YP_001721527  decreased coverage  4.89425e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2798  CDS  NC_010465  3088468  3090264  1797  sulfatase  YP_001721528  decreased coverage  0.000743938  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2954  CDS  NC_010465  3252963  3253772  810  tol-pal system protein YbgF  YP_001721681  decreased coverage  6.55346e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2955  CDS  NC_010465  3253782  3254288  507  peptidoglycan-associated outer membrane lipoprotein  YP_001721682  decreased coverage  8.83314e-11  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2974  CDS  NC_010465  3274531  3275109  579  heat shock protein GrpE  YP_001721701  decreased coverage  3.64467e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2990  CDS  NC_010465  3284454  3284981  528  flavodoxin FldA  YP_001721717  decreased coverage  0.000344079  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3154  CDS  NC_010465  3449100  3449822  723  UDP-2,3-diacylglucosamine hydrolase  YP_001721878  decreased coverage  5.90345e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3209  CDS  NC_010465  3511951  3512409  459  transposase IS200-family protein  YP_001721931  decreased coverage  1.15009e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3235  CDS  NC_010465  3538871  3540175  1305  trigger factor  YP_001721957  decreased coverage  0.00052643  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3264  CDS  NC_010465  3568401  3569525  1125  queuine tRNA-ribosyltransferase  YP_001721986  decreased coverage  0.000400897  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3344  CDS  NC_010465  3666148  3667503  1356  phosphatidylserine synthase  YP_001722066  decreased coverage  0.00469023  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3449  CDS  NC_010465  3783755  3785989  2235  GDP/GTP pyrophosphokinase  YP_001722169  decreased coverage  3.78764e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3469  CDS  NC_010465  3810823  3812007  1185  glutamyl-Q tRNA(Asp) synthetase  YP_001722189  decreased coverage  1.16518e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3504  CDS  NC_010465  3850474  3851226  753  hypothetical protein  YP_001722224  decreased coverage  6.50274e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3512  CDS  NC_010465  3857320  3858243  924  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_001722232  decreased coverage  1.4804e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3569  CDS  NC_010465  3932557  3933390  834  Dna-J like membrane chaperone protein  YP_001722289  decreased coverage  7.71944e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3590  CDS  NC_010465  3957343  3957606  264  30S ribosomal protein S20  YP_001722310  decreased coverage  5.79115e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3678  CDS  NC_010465  4062486  4063580  1095  permease YjgP/YjgQ family protein  YP_001722398  decreased coverage  4.32318e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3736  CDS  NC_010465  4128536  4130479  1944  ATP-dependent metalloprotease  YP_001722456  decreased coverage  4.70783e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3757  CDS  NC_010465  4145797  4146108  312  50S ribosomal protein L21  YP_001722477  decreased coverage  6.20592e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3855  CDS  NC_010465  4246658  4248013  1356  replicative DNA helicase  YP_001722573  decreased coverage  2.04415e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3876  CDS  NC_010465  4276480  4277664  1185  stress protein  YP_001722594  decreased coverage  2.02647e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3889  CDS  NC_010465  4288884  4290914  2031  TonB-dependent heme/hemoglobin receptor family protein  YP_001722607  decreased coverage  3.56309e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4033  CDS  NC_010465  4448225  4449307  1083  undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase  YP_001722748  decreased coverage  4.7197e-05  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4131  CDS  NC_010465  4563793  4564281  489  periplasmic stress adaptor protein CpxP  YP_001722843  decreased coverage  3.37772e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4132  CDS  NC_010465  4564455  4565153  699  DNA-binding transcriptional regulator CpxR  YP_001722844  decreased coverage  4.94358e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4133  CDS  NC_010465  4565150  4566526  1377  two-component sensor protein  YP_001722845  decreased coverage  0.000603711  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4152  CDS  NC_010465  4584852  4585661  810  formamidopyrimidine-DNA glycosylase  YP_001722864  decreased coverage  2.25921e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4177  CDS  NC_010465  4605394  4605669  276  DNA-directed RNA polymerase subunit omega  YP_001722889  decreased coverage  0.00539722  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4195  CDS  NC_010465  4629710  4632508  2799  DNA polymerase I  YP_001722907  decreased coverage  0.00580719  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4206  CDS  NC_010465  4643733  4644422  690  GntR domain-containing protein  YP_001722915  decreased coverage  4.81189e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4220  CDS  NC_010465  4659293  4660117  825  F0F1 ATP synthase subunit A  YP_001722929  decreased coverage  1.14872e-08  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4250  CDS  NC_010465  4689109  4689249  141  hypothetical protein  YP_001722959  decreased coverage  1.06121e-10  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0005  tRNA  NC_010465  353778  353853  76  tRNA-Thr    decreased coverage  8.32804e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0006  tRNA  NC_010465  353872  353956  85  tRNA-Tyr    decreased coverage  8.63158e-06  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0015  tRNA  NC_010465  1587753  1587828  76  tRNA-Val    decreased coverage  1.29516e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0016  tRNA  NC_010465  1587865  1587940  76  tRNA-Val    decreased coverage  1.37967e-09  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0042  tRNA  NC_010465  4433682  4433758  77  tRNA-Arg    decreased coverage  0.00513283  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0085  rRNA  NC_010465  1236260  1237794  1535  16S ribosomal RNA    decreased coverage  3.51585e-07  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
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