201 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Cpin_0096  CDS  NC_013132  116800  117090  291  hypothetical protein  YP_003119802  decreased coverage  1.38623e-06  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0160  CDS  NC_013132  194009  194860  852  hypothetical protein  YP_003119862  decreased coverage  0.00851627  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0286  CDS  NC_013132  334053  334364  312  hypothetical protein  YP_003119986  decreased coverage  2.8688e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0323  CDS  NC_013132  371461  373884  2424  glycoside hydrolase family 3 domain protein  YP_003120023  decreased coverage  0.000125133  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0406  CDS  NC_013132  488500  489891  1392  hypothetical protein  YP_003120105  decreased coverage  8.06468e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0453  CDS  NC_013132  538080  539489  1410  RagB/SusD domain protein  YP_003120152  decreased coverage  0.000455349  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0482  CDS  NC_013132  579550  579750  201  hypothetical protein  YP_003120181  decreased coverage  3.42211e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0483  CDS  NC_013132  579778  581061  1284  protein of unknown function DUF323  YP_003120182  decreased coverage  0.000150306  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0523  CDS  NC_013132  620538  621599  1062  cytochrome c oxidase subunit II  YP_003120222  decreased coverage  0.00550922  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0554  CDS  NC_013132  674435  676309  1875  potassium efflux system protein  YP_003120253  decreased coverage  0.00935447  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0812  CDS  NC_013132  974524  975861  1338  oxidoreductase domain protein  YP_003120511  decreased coverage  0.000177397  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_0813  CDS  NC_013132  975944  977266  1323  peptidase S13 D-Ala-D-Ala carboxypeptidase C  YP_003120512  decreased coverage  2.56542e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1028  CDS  NC_013132  1232618  1233427  810  inositol monophosphatase  YP_003120727  decreased coverage  0.00157763  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1029  CDS  NC_013132  1233549  1235081  1533  GH3 auxin-responsive promoter  YP_003120728  decreased coverage  0.00063016  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1097  CDS  NC_013132  1315207  1318653  3447  TonB-dependent receptor plug  YP_003120796  decreased coverage  0.00128264  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1098  CDS  NC_013132  1318665  1320131  1467  hypothetical protein  YP_003120797  decreased coverage  7.76149e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1225  CDS  NC_013132  1466633  1467379  747  protein of unknown function DUF1003  YP_003120924  decreased coverage  0.000330099  normal  0.0160942  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1226  CDS  NC_013132  1467505  1469706  2202  hypothetical protein  YP_003120925  decreased coverage  5.03641e-05  normal  0.0807191  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1251  CDS  NC_013132  1496124  1497191  1068  Holliday junction DNA helicase RuvB  YP_003120950  decreased coverage  4.92423e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1737  CDS  NC_013132  2093783  2095084  1302  hypothetical protein  YP_003121434  decreased coverage  2.91143e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1779  CDS  NC_013132  2156702  2158282  1581  Carbohydrate binding family 6  YP_003121476  decreased coverage  0.00214562  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1898  CDS  NC_013132  2318912  2320516  1605  hypothetical protein  YP_003121595  decreased coverage  0.00446967  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_1926  CDS  NC_013132  2352051  2353181  1131  FAD dependent oxidoreductase  YP_003121623  decreased coverage  1.71053e-05  normal  0.0881723  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2020  CDS  NC_013132  2462232  2463056  825  2-dehydro-3-deoxyphosphooctonate aldolase  YP_003121716  normal  decreased coverage  0.00991781  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2192  CDS  NC_013132  2698042  2699496  1455  hypothetical protein  YP_003121885  decreased coverage  0.00226108  hitchhiker  6.96237e-06  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2196  CDS  NC_013132  2710767  2714936  4170  PKD domain containing protein  YP_003121889  hitchhiker  0.00127205  decreased coverage  7.51433e-12  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2198  CDS  NC_013132  2716004  2717788  1785  OmpA/MotB domain protein  YP_003121891  unclonable  1.3848e-07  decreased coverage  2.0207e-11  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2281  CDS  NC_013132  2812044  2813480  1437  hypothetical protein  YP_003121973  decreased coverage  0.000175993  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2295  CDS  NC_013132  2827215  2827697  483  hypothetical protein  YP_003121987  decreased coverage  2.19695e-05  normal  0.82539  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2296  CDS  NC_013132  2827725  2829842  2118  L-ascorbate oxidase  YP_003121988  decreased coverage  7.73884e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2297  CDS  NC_013132  2830002  2830805  804  hypothetical protein  YP_003121989  decreased coverage  6.76195e-06  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2363  CDS  NC_013132  2905691  2907037  1347  nucleotide sugar dehydrogenase  YP_003122055  decreased coverage  6.5452e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2372  CDS  NC_013132  2916862  2917992  1131  glycosyl transferase group 1  YP_003122064  decreased coverage  0.00451515  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2410  CDS  NC_013132  2964890  2966485  1596  hypothetical protein  YP_003122102  decreased coverage  2.57866e-06  normal  0.6934  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2434  CDS  NC_013132  2993013  2994779  1767  RagB/SusD domain protein  YP_003122126  decreased coverage  1.09153e-06  normal  0.490439  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2523  CDS  NC_013132  3099507  3100076  570  NLP/P60 protein  YP_003122208  decreased coverage  0.000113171  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2524  CDS  NC_013132  3100090  3100581  492  hypothetical protein  YP_003122209  decreased coverage  7.71061e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2583  CDS  NC_013132  3162670  3165888  3219  acriflavin resistance protein  YP_003122267  decreased coverage  0.000643867  normal  0.0481028  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2584  CDS  NC_013132  3165893  3167293  1401  outer membrane efflux protein  YP_003122268  normal  0.0423133  decreased coverage  0.00978547  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2585  CDS  NC_013132  3167324  3168658  1335  histidine kinase  YP_003122269  normal  0.421743  decreased coverage  0.00983118  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2595  CDS  NC_013132  3180989  3181894  906  lipid A biosynthesis acyltransferase  YP_003122279  decreased coverage  1.62e-06  normal  0.104426  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2670  CDS  NC_013132  3262938  3264392  1455  RagB/SusD domain protein  YP_003122353  decreased coverage  0.0022001  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2691  CDS  NC_013132  3290493  3292526  2034  heavy metal translocating P-type ATPase  YP_003122374  decreased coverage  0.000392572  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2736  CDS  NC_013132  3348916  3350799  1884  hypothetical protein  YP_003122416  decreased coverage  0.00161414  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2737  CDS  NC_013132  3350812  3353016  2205  alpha-L-rhamnosidase  YP_003122417  decreased coverage  5.03167e-06  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2772  CDS  NC_013132  3399157  3403539  4383  hypothetical protein  YP_003122452  unclonable  0.00073265  decreased coverage  3.04367e-05  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2829  CDS  NC_013132  3485816  3486808  993  hypothetical protein  YP_003122509  decreased coverage  0.000175796  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2830  CDS  NC_013132  3486810  3488174  1365  secretion protein HlyD  YP_003122510  decreased coverage  4.58855e-06  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2831  CDS  NC_013132  3488206  3489657  1452  putative outer membrane protein  YP_003122511  decreased coverage  0.000620867  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2840  CDS  NC_013132  3500121  3501449  1329  L-lysine 6-monooxygenase (NADPH)  YP_003122520  decreased coverage  0.000828048  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2847  CDS  NC_013132  3512229  3513374  1146  glycoside hydrolase family 43  YP_003122527  decreased coverage  4.78451e-07  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2852  CDS  NC_013132  3518849  3522877  4029  histidine kinase  YP_003122532  decreased coverage  0.0012841  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2860  CDS  NC_013132  3537370  3538596  1227  Fibronectin type III domain protein  YP_003122540  decreased coverage  2.0084e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2968  CDS  NC_013132  3661118  3661705  588  metal dependent phophohydrolase  YP_003122647  decreased coverage  3.80455e-06  hitchhiker  0.000533169  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_2996  CDS  NC_013132  3701428  3703668  2241  Patatin  YP_003122673  decreased coverage  1.24103e-05  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3209  CDS  NC_013132  3961119  3961760  642  hypothetical protein  YP_003122877  decreased coverage  0.00974735  normal  0.788184  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3292  CDS  NC_013132  4055526  4056887  1362  Redoxin domain protein  YP_003122960  decreased coverage  7.83621e-07  hitchhiker  0.000211392  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3304  CDS  NC_013132  4068410  4069078  669  hypothetical protein  YP_003122972  normal  0.92464  decreased coverage  8.8301e-06  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3305  CDS  NC_013132  4069140  4069955  816  transcriptional regulator, AraC family  YP_003122973  normal  decreased coverage  9.08006e-06  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3307  CDS  NC_013132  4070331  4072088  1758  ABC transporter related  YP_003122975  normal  0.233866  decreased coverage  5.37626e-06  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3435  CDS  NC_013132  4280620  4282851  2232  hypothetical protein  YP_003123103  decreased coverage  0.000331011  normal  0.56505  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3442  CDS  NC_013132  4292976  4294433  1458  methylmalonate-semialdehyde dehydrogenase  YP_003123110  decreased coverage  9.38432e-06  normal  0.12145  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3443  CDS  NC_013132  4294461  4295813  1353  aminotransferase class-III  YP_003123111  decreased coverage  6.05746e-06  normal  0.17806  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3444  CDS  NC_013132  4295862  4297385  1524  NCS1 nucleoside transporter family  YP_003123112  decreased coverage  4.77865e-05  normal  0.0865773  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3470  CDS  NC_013132  4330473  4331744  1272  McrBC 5-methylcytosine restriction system component-like protein  YP_003123138  decreased coverage  0.00801853  normal  0.511219  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3553  CDS  NC_013132  4427541  4430786  3246  TonB-dependent receptor plug  YP_003123218  normal  0.467854  decreased coverage  0.00228984  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3560  CDS  NC_013132  4439956  4442331  2376  Protein of unknown function DUF1963  YP_003123225  decreased coverage  0.00826775  normal  0.0597462  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3577  CDS  NC_013132  4458049  4459467  1419  RND efflux system, outer membrane lipoprotein, NodT family  YP_003123241  decreased coverage  0.000202901  normal  0.0451617  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3588  CDS  NC_013132  4470233  4473193  2961  TonB-dependent receptor plug  YP_003123252  decreased coverage  0.00353353  hitchhiker  0.00053116  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3622  CDS  NC_013132  4517124  4532060  14937  conserved repeat domain protein  YP_003123285  normal  decreased coverage  1.3093e-07  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3647  CDS  NC_013132  4581133  4582437  1305  L-sorbosone dehydrogenase  YP_003123310  decreased coverage  0.000551723  normal  0.19553  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3654  CDS  NC_013132  4588637  4590274  1638  Methylcrotonoyl-CoA carboxylase  YP_003123317  decreased coverage  0.000718459  normal  0.127593  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3655  CDS  NC_013132  4590308  4590763  456  ribonuclease H  YP_003123318  decreased coverage  0.00499502  normal  0.0620959  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3675  CDS  NC_013132  4612334  4612771  438  DoxX family protein  YP_003123338  decreased coverage  0.00136141  normal  0.200959  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3703  CDS  NC_013132  4642036  4644225  2190  lipopolysaccharide biosynthesis protein  YP_003123366  decreased coverage  3.80193e-05  normal  0.301221  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3723  CDS  NC_013132  4677288  4678301  1014  aminoglycoside phosphotransferase  YP_003123386  decreased coverage  0.00316324  normal  0.0533229  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3748  CDS  NC_013132  4712127  4713581  1455  hypothetical protein  YP_003123411  decreased coverage  7.95309e-05  hitchhiker  0.0030184  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3749  CDS  NC_013132  4713600  4717007  3408  TonB-dependent receptor plug  YP_003123412  decreased coverage  0.0080305  decreased coverage  0.0015737  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3751  CDS  NC_013132  4718144  4719331  1188  beta-lactamase  YP_003123414  normal  decreased coverage  0.000498352  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3752  CDS  NC_013132  4719635  4720873  1239  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding  YP_003123415  normal  decreased coverage  0.000504236  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3753  CDS  NC_013132  4721211  4723130  1920  Carbohydrate binding family 6  YP_003123416  normal  decreased coverage  0.000661715  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3756  CDS  NC_013132  4724568  4736783  12216  hypothetical protein  YP_003123419  normal  decreased coverage  0.00737008  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3800  CDS  NC_013132  4777167  4778402  1236  hypothetical protein  YP_003123463  decreased coverage  9.79788e-05  normal  0.0838269  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3801  CDS  NC_013132  4778414  4779775  1362  sulfatase  YP_003123464  decreased coverage  0.00499822  normal  0.102523  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3809  CDS  NC_013132  4792419  4793828  1410  RagB/SusD domain protein  YP_003123472  decreased coverage  0.00323854  normal  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3907  CDS  NC_013132  4860931  4861338  408  hypothetical protein  YP_003123570  normal  0.284042  decreased coverage  0.00232908  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3908  CDS  NC_013132  4861347  4861646  300  hypothetical protein  YP_003123571  normal  0.255272  decreased coverage  0.0019745  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3909  CDS  NC_013132  4861643  4862050  408  hypothetical protein  YP_003123572  normal  0.64728  decreased coverage  0.00213432  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3920  CDS  NC_013132  4870565  4871137  573  hypothetical protein  YP_003123583  decreased coverage  5.93759e-07  hitchhiker  0.00522191  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_3921  CDS  NC_013132  4871150  4871959  810  hypothetical protein  YP_003123584  decreased coverage  5.99634e-06  hitchhiker  0.00572249  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4000  CDS  NC_013132  4976737  4978665  1929  transglutaminase domain protein  YP_003123663  decreased coverage  0.000741085  normal  0.0455178  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4009  CDS  NC_013132  4986865  4989096  2232  Glutamate carboxypeptidase II  YP_003123672  normal  0.677524  decreased coverage  0.0030346  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4010  CDS  NC_013132  4989359  4990054  696  two component transcriptional regulator, LytTR family  YP_003123673  normal  0.0569074  decreased coverage  0.00157623  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4011  CDS  NC_013132  4990182  4990547  366  hypothetical protein  YP_003123674  normal  0.0367366  decreased coverage  0.00137129  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4012  CDS  NC_013132  4990652  4992049  1398  outer membrane efflux protein  YP_003123675  normal  0.0140035  decreased coverage  0.00198888  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4013  CDS  NC_013132  4992068  4995226  3159  acriflavin resistance protein  YP_003123676  decreased coverage  0.00812103  normal  0.0431694  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4023  CDS  NC_013132  5005359  5007140  1782  glycoside hydrolase 15-related  YP_003123685  decreased coverage  0.000792533  normal  0.121588  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4031  CDS  NC_013132  5015127  5016359  1233  ornithine aminotransferase  YP_003123693  decreased coverage  0.0013504  normal  0.512867  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4062  CDS  NC_013132  5052061  5053338  1278  sodium/hydrogen exchanger  YP_003123723  decreased coverage  3.59855e-07  normal  0.100381  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
Cpin_4096  CDS  NC_013132  5097192  5098703  1512  RNA-directed DNA polymerase  YP_003123757  normal  0.559536  decreased coverage  0.00132116  Chitinophaga pinensis DSM 2588  Bacteria 
 
 
-
 
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