113 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Phep_0294  CDS  NC_013061  344255  345481  1227  cytochrome c oxidase subunit II  YP_003090581  decreased coverage  0.00251297  hitchhiker  0.000594912  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_0295  CDS  NC_013061  345502  347391  1890  Cytochrome-c oxidase  YP_003090582  decreased coverage  0.00055862  hitchhiker  0.00186796  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_0300  CDS  NC_013061  350812  351171  360  hypothetical protein  YP_003090587  normal  decreased coverage  0.000123486  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_0301  CDS  NC_013061  351171  351878  708  electron transport protein SCO1/SenC  YP_003090588  normal  decreased coverage  0.000148363  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_0302  CDS  NC_013061  351891  352427  537  protein of unknown function DUF420  YP_003090589  normal  decreased coverage  0.00015964  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_0303  CDS  NC_013061  352569  353180  612  RNA polymerase sigma-70 factor  YP_003090590  normal  decreased coverage  0.000168317  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1016  CDS  NC_013061  1189255  1191039  1785  RagB/SusD domain protein  YP_003091299  decreased coverage  0.00288117  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1293  CDS  NC_013061  1530705  1533734  3030  coagulation factor 5/8 type domain protein  YP_003091570  decreased coverage  0.00882728  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1301  CDS  NC_013061  1548589  1550304  1716  RagB/SusD domain protein  YP_003091578  decreased coverage  0.0026313  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1401  CDS  NC_013061  1671048  1671998  951  NusB/RsmB/TIM44  YP_003091677  normal  decreased coverage  0.00979954  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1642  CDS  NC_013061  1942713  1943765  1053  chalcone and stilbene synthase domain protein  YP_003091917  normal  decreased coverage  0.00774069  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1643    NC_013061  1943762  1944479  718      normal  decreased coverage  0.0071782  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1644  CDS  NC_013061  1944476  1945612  1137  FAD dependent oxidoreductase  YP_003091918  normal  decreased coverage  0.00782092  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1715  CDS  NC_013061  2037108  2037287  180  hypothetical protein  YP_003091988  hitchhiker  0.00661685  decreased coverage  4.80147e-05  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1716  CDS  NC_013061  2037365  2038348  984  PAS sensor protein  YP_003091989  hitchhiker  0.00344833  decreased coverage  8.13906e-05  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1717  CDS  NC_013061  2038502  2038942  441  Activator of Hsp90 ATPase 1 family protein  YP_003091990  decreased coverage  2.65045e-05  decreased coverage  5.8621e-05  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1718  CDS  NC_013061  2038929  2039261  333  regulatory protein ArsR  YP_003091991  decreased coverage  1.89472e-05  hitchhiker  0.000160719  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1719  CDS  NC_013061  2039351  2039524  174  hypothetical protein  YP_003091992  decreased coverage  1.35239e-05  hitchhiker  0.00015235  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1720  CDS  NC_013061  2039861  2040052  192  hypothetical protein  YP_003091993  decreased coverage  1.18537e-05  hitchhiker  0.000148363  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1721  CDS  NC_013061  2040064  2040375  312  hypothetical protein  YP_003091994  decreased coverage  1.48529e-05  hitchhiker  0.000155428  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1722  CDS  NC_013061  2041117  2042184  1068  glycosidase PH1107-related  YP_003091995  unclonable  7.91852e-06  decreased coverage  7.65137e-05  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1792  CDS  NC_013061  2084068  2085732  1665  hypothetical protein  YP_003092063  decreased coverage  0.00820192  hitchhiker  0.00105641  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1813  CDS  NC_013061  2112708  2112953  246  hypothetical protein  YP_003092084  decreased coverage  1.35239e-05  hitchhiker  1.21088e-09  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1814  CDS  NC_013061  2112953  2113252  300  plasmid stabilization system  YP_003092085  unclonable  1.02584e-06  decreased coverage  8.74198e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1815  CDS  NC_013061  2113316  2113561  246  hypothetical protein  YP_003092086  hitchhiker  0.00011336  decreased coverage  9.08972e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1816  CDS  NC_013061  2113820  2116222  2403  glycoside hydrolase family 2 sugar binding  YP_003092087  normal  0.0827193  decreased coverage  3.16153e-10  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1817  CDS  NC_013061  2116228  2116590  363  hypothetical protein  YP_003092088  normal  0.0179711  decreased coverage  5.87456e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1818  CDS  NC_013061  2116560  2116874  315  helix-turn-helix domain protein  YP_003092089  normal  0.0350108  decreased coverage  6.23016e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1819  CDS  NC_013061  2117130  2117426  297  hypothetical protein  YP_003092090  normal  0.0374309  decreased coverage  6.16753e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1820    NC_013061  2117432  2117530  99      normal  0.0309273  decreased coverage  5.17767e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1821  CDS  NC_013061  2117679  2117981  303  hypothetical protein  YP_003092091  normal  0.0398156  decreased coverage  5.64838e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1822  CDS  NC_013061  2117982  2118404  423  hypothetical protein  YP_003092092  normal  0.0467318  decreased coverage  6.04835e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1823  CDS  NC_013061  2118675  2119442  768  hypothetical protein  YP_003092093  normal  0.0181821  decreased coverage  8.16983e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1824  CDS  NC_013061  2119522  2120157  636  hypothetical protein  YP_003092094  unclonable  3.48274e-06  decreased coverage  8.0896e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1825  CDS  NC_013061  2120231  2120575  345  hypothetical protein  YP_003092095  decreased coverage  2.37005e-05  decreased coverage  5.81684e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1826  CDS  NC_013061  2120608  2121057  450  hypothetical protein  YP_003092096  decreased coverage  2.67645e-05  decreased coverage  6.16753e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1827  CDS  NC_013061  2121204  2121464  261  hypothetical protein  YP_003092097  decreased coverage  1.7743e-05  decreased coverage  5.1268e-11  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1828  CDS  NC_013061  2121525  2122580  1056  hypothetical protein  YP_003092098  decreased coverage  0.000118361  hitchhiker  1.00515e-09  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1976  CDS  NC_013061  2280728  2281762  1035  UbiA prenyltransferase  YP_003092246  normal  decreased coverage  2.57247e-09  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_1977  CDS  NC_013061  2281783  2283225  1443  2-keto-gluconate dehydrogenase subunit  YP_003092247  normal  decreased coverage  3.36524e-09  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2093  CDS  NC_013061  2412727  2414208  1482  phytoene desaturase  YP_003092360  normal  0.456364  decreased coverage  0.00855511  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2272  CDS  NC_013061  2639699  2641138  1440  major facilitator superfamily MFS_1  YP_003092538  normal  0.972023  decreased coverage  0.00181869  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2273  CDS  NC_013061  2641492  2642295  804  hypothetical protein  YP_003092539  normal  decreased coverage  0.000548322  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2274  CDS  NC_013061  2642307  2643107  801  radical SAM domain protein  YP_003092540  normal  decreased coverage  0.00122382  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2275  CDS  NC_013061  2643160  2644353  1194  trans-2-enoyl-CoA reductase  YP_003092541  normal  decreased coverage  0.00154098  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2276  CDS  NC_013061  2644423  2644953  531  isopentenyl-diphosphate delta-isomerase, type 1  YP_003092542  normal  decreased coverage  0.00103129  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2282  CDS  NC_013061  2650683  2652305  1623  RagB/SusD domain protein  YP_003092548  normal  decreased coverage  0.00108991  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2301  CDS  NC_013061  2676179  2677552  1374  hypothetical protein  YP_003092567  decreased coverage  0.000171205  normal  0.0280114  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2302  CDS  NC_013061  2677613  2679376  1764  hypothetical protein  YP_003092568  decreased coverage  0.00274219  normal  0.132438  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2369  CDS  NC_013061  2765531  2766574  1044  hypothetical protein  YP_003092635  normal  decreased coverage  0.00543719  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2378  CDS  NC_013061  2775623  2777197  1575  Na+/H+ antiporter  YP_003092644  decreased coverage  0.00588494  normal  0.191499  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2428  CDS  NC_013061  2823423  2823848  426  protein of unknown function DUF1486  YP_003092694  decreased coverage  0.000117407  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2429  CDS  NC_013061  2824003  2825220  1218  major facilitator superfamily MFS_1  YP_003092695  decreased coverage  0.00087995  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2493  CDS  NC_013061  2891965  2893149  1185  PAS sensor protein  YP_003092759  normal  0.0714891  decreased coverage  0.00496497  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2605  CDS  NC_013061  3050901  3052292  1392  Alpha-L-fucosidase  YP_003092871  decreased coverage  0.00783953  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2606  CDS  NC_013061  3052289  3053662  1374  lipolytic protein G-D-S-L family  YP_003092872  decreased coverage  0.00170788  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2607  CDS  NC_013061  3053699  3054970  1272  hypothetical protein  YP_003092873  decreased coverage  0.0001696  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2608  CDS  NC_013061  3054979  3055596  618  hypothetical protein  YP_003092874  decreased coverage  0.00101879  normal  0.820547  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2609  CDS  NC_013061  3055613  3057349  1737  glucose-methanol-choline oxidoreductase  YP_003092875  decreased coverage  0.00973308  normal  0.475535  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2691  CDS  NC_013061  3155192  3155755  564  RNA polymerase sigma factor, sigma-70 family  YP_003092954  normal  decreased coverage  0.00174233  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2692  CDS  NC_013061  3155883  3157394  1512  hypothetical protein  YP_003092955  normal  0.996294  decreased coverage  0.00255233  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2696  CDS  NC_013061  3162335  3163522  1188  hypothetical protein  YP_003092959  decreased coverage  0.000585774  normal  0.273153  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2705  CDS  NC_013061  3178700  3179188  489  PilT protein domain protein  YP_003092968  decreased coverage  0.000855121  normal  0.254585  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2709  CDS  NC_013061  3183868  3185337  1470  RagB/SusD domain protein  YP_003092972  decreased coverage  0.000284151  normal  0.714697  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2748  CDS  NC_013061  3245807  3247861  2055  protein of unknown function DUF1680  YP_003093011  decreased coverage  0.0072487  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2773  CDS  NC_013061  3272064  3274268  2205  alpha-L-rhamnosidase  YP_003093034  decreased coverage  0.00141117  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2774  CDS  NC_013061  3274278  3275867  1590  SSS sodium solute transporter superfamily  YP_003093035  decreased coverage  0.00224729  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2835  CDS  NC_013061  3375535  3376623  1089  Heparin lyase  YP_003093096  normal  0.396021  decreased coverage  0.00230241  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2837  CDS  NC_013061  3377427  3378113  687  hypothetical protein  YP_003093098  normal  0.932789  decreased coverage  0.00194741  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2838  CDS  NC_013061  3378132  3381365  3234  Lyase catalytic  YP_003093099  normal  decreased coverage  0.00102032  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2839  CDS  NC_013061  3381376  3382590  1215  glycosyl hydrolase family 88  YP_003093100  normal  decreased coverage  0.00286392  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_2912  CDS  NC_013061  3473838  3475352  1515  aromatic hydrocarbon degradation membrane protein  YP_003093172  unclonable  2.66904e-05  decreased coverage  2.78928e-10  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3053  CDS  NC_013061  3649435  3651372  1938  heavy metal efflux pump, CzcA family  YP_003093313  unclonable  0.000102384  decreased coverage  0.000425378  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3054  CDS  NC_013061  3651369  3652667  1299  heavy metal efflux pump, CzcA family  YP_003093314  hitchhiker  0.000138497  decreased coverage  0.000798873  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3055  CDS  NC_013061  3652705  3653055  351  hypothetical protein  YP_003093315  normal  0.242531  decreased coverage  0.000503951  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3056  CDS  NC_013061  3653154  3653552  399  hypothetical protein  YP_003093316  normal  0.619064  decreased coverage  0.000491521  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3057  CDS  NC_013061  3653651  3653863  213  hypothetical protein  YP_003093317  normal  0.726798  decreased coverage  0.000436786  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3058  CDS  NC_013061  3653967  3656189  2223  copper-translocating P-type ATPase  YP_003093318  normal  decreased coverage  0.00108991  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3059  CDS  NC_013061  3656342  3657109  768  Trans-aconitate 2-methyltransferase  YP_003093319  normal  decreased coverage  0.000652441  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3060    NC_013061  3657248  3657948  701      normal  decreased coverage  0.000685673  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3106  CDS  NC_013061  3707464  3709350  1887  hypothetical protein  YP_003093365  decreased coverage  0.00077552  normal  0.691354  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3249  CDS  NC_013061  3852808  3854295  1488  glycyl-tRNA synthetase  YP_003093506  normal  0.281053  decreased coverage  0.00448945  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3250  CDS  NC_013061  3854327  3856282  1956  Beta-N-acetylhexosaminidase  YP_003093507  normal  0.0167827  decreased coverage  0.00105641  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3251  CDS  NC_013061  3856289  3857500  1212  N-acylglucosamine 2-epimerase  YP_003093508  normal  0.947715  decreased coverage  0.0046378  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3257  CDS  NC_013061  3864616  3866184  1569  RagB/SusD domain protein  YP_003093514  decreased coverage  0.00159706  normal  0.0650602  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3388  CDS  NC_013061  4029273  4029689  417  hypothetical protein  YP_003093644  decreased coverage  0.000862126  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3401  CDS  NC_013061  4046153  4048402  2250  Alpha-N-acetylglucosaminidase  YP_003093657  decreased coverage  0.00825517  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3402  CDS  NC_013061  4048409  4050613  2205  Alpha-N-acetylglucosaminidase  YP_003093658  decreased coverage  0.0013857  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3403  CDS  NC_013061  4050670  4051743  1074  glycoside hydrolase family 43  YP_003093659  decreased coverage  0.000194853  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3421  CDS  NC_013061  4074788  4075255  468  hypothetical protein  YP_003093677  decreased coverage  0.000667673  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3422  CDS  NC_013061  4075286  4076767  1482  ketol-acid reductoisomerase  YP_003093678  decreased coverage  0.000227916  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3654  CDS  NC_013061  4368016  4369008  993  aspartate-semialdehyde dehydrogenase  YP_003093907  decreased coverage  0.00566269  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3694  CDS  NC_013061  4409257  4410015  759  hypothetical protein  YP_003093947  decreased coverage  6.24309e-05  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3695  CDS  NC_013061  4410026  4410922  897  fatty acid hydroxylase  YP_003093948  decreased coverage  0.00011612  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3744  CDS  NC_013061  4472618  4474657  2040  OmpA/MotB domain protein  YP_003093997  decreased coverage  0.000811796  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3745  CDS  NC_013061  4474661  4475674  1014  hypothetical protein  YP_003093998  decreased coverage  0.000575812  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3765  CDS  NC_013061  4510493  4511413  921  inner-membrane translocator  YP_003094018  decreased coverage  0.00344833  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3766  CDS  NC_013061  4511424  4512902  1479  ABC transporter related  YP_003094019  decreased coverage  0.0098796  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3818  CDS  NC_013061  4582040  4582513  474  acetyl-CoA carboxylase, biotin carboxyl carrier protein  YP_003094071  decreased coverage  0.000109425  normal  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
Phep_3920  CDS  NC_013061  4719650  4720249  600  sugar transferase  YP_003094173  normal  decreased coverage  0.00326653  Pedobacter heparinus DSM 2366  Bacteria 
 
 
-
 
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