58 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dret_0130  CDS  NC_013223  170552  172195  1644  choline dehydrogenase  YP_003197010  decreased coverage  1.05235e-08  normal  0.777409  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0147  CDS  NC_013223  191085  192812  1728  30S ribosomal protein S1  YP_003197027  decreased coverage  1.64989e-08  normal  0.503273  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0164  CDS  NC_013223  207223  208188  966  hypothetical protein  YP_003197044  decreased coverage  0.0015948  normal  0.315388  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0182  CDS  NC_013223  232292  232891  600  multiple antibiotic resistance (MarC)-related protein  YP_003197062  decreased coverage  0.000388483  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0513  CDS  NC_013223  623103  625550  2448  ATP-dependent protease La  YP_003197388  decreased coverage  0.00559437  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0722  CDS  NC_013223  855533  856264  732  putative transcriptional regulator, Crp/Fnr family  YP_003197592  decreased coverage  0.000366193  normal  0.731263  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0723  CDS  NC_013223  856277  856714  438  hypothetical protein  YP_003197593  decreased coverage  0.000173916  normal  0.921653  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0735  CDS  NC_013223  867577  868014  438  ribosomal protein L13  YP_003197605  decreased coverage  1.19852e-10  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_0883  CDS  NC_013223  1042349  1043749  1401  RNA-directed DNA polymerase (Reverse transcriptase)  YP_003197752  decreased coverage  0.00469922  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0956  CDS  NC_013223  1130294  1130836  543  hypothetical protein  YP_003197822  hitchhiker  9.87724e-11  decreased coverage  3.22474e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0957  CDS  NC_013223  1130854  1131258  405  hypothetical protein  YP_003197823  hitchhiker  4.59969e-11  decreased coverage  2.76265e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0958  CDS  NC_013223  1132174  1132815  642  protein of unknown function DUF1121  YP_003197824  hitchhiker  1.55501e-10  decreased coverage  3.58592e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_0959  CDS  NC_013223  1132805  1133080  276  hypothetical protein  YP_003197825  hitchhiker  4.42218e-11  decreased coverage  2.65735e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0960  CDS  NC_013223  1133181  1133510  330  hypothetical protein  YP_003197826  unclonable  2.28243e-12  decreased coverage  2.95621e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0961  CDS  NC_013223  1133965  1134963  999  hypothetical protein  YP_003197827  unclonable  3.80867e-11  decreased coverage  4.1454e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0962  CDS  NC_013223  1135314  1136429  1116  integrase family protein  YP_003197828  unclonable  5.86623e-11  decreased coverage  3.58592e-10  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_0988  CDS  NC_013223  1162006  1163463  1458  inosine-5'-monophosphate dehydrogenase  YP_003197854  decreased coverage  0.00325513  hitchhiker  0.000530591  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1032  CDS  NC_013223  1215268  1215912  645  protein of unknown function DUF162  YP_003197898  decreased coverage  0.00153846  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1038  CDS  NC_013223  1226205  1227590  1386  FAD linked oxidase domain protein  YP_003197904  decreased coverage  0.00807921  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_1103  CDS  NC_013223  1294039  1295754  1716  type IV-A pilus assembly ATPase PilB  YP_003197969  normal  0.202418  decreased coverage  0.00743342  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_1104  CDS  NC_013223  1295864  1297069  1206  Type II secretion system F domain protein  YP_003197970  normal  0.250932  decreased coverage  0.00579509  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1118  CDS  NC_013223  1308469  1311285  2817  isoleucyl-tRNA synthetase  YP_003197984  decreased coverage  0.00413581  normal  0.0891258  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1140  CDS  NC_013223  1337079  1337471  393  iojap-like protein  YP_003198006  decreased coverage  1.05704e-10  normal  0.940401  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1235  CDS  NC_013223  1448562  1449338  777  Cobyrinic acid ac-diamide synthase  YP_003198101  decreased coverage  0.00902647  normal  0.593653  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_1246  CDS  NC_013223  1460976  1461254  279  hypothetical protein  YP_003198112  decreased coverage  0.00124199  normal  0.942909  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1277  CDS  NC_013223  1496907  1498223  1317  iron-sulfur binding protein  YP_003198143  decreased coverage  0.000111137  normal  0.38005  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1278  CDS  NC_013223  1498208  1498894  687  nitrite and sulphite reductase 4Fe-4S region  YP_003198144  decreased coverage  1.99132e-05  normal  0.43012  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1296  CDS  NC_013223  1517158  1518345  1188  permease YjgP/YjgQ family protein  YP_003198162  decreased coverage  0.00381796  normal  0.151885  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1315  CDS  NC_013223  1540730  1541386  657  Sporulation domain protein  YP_003198181  normal  decreased coverage  0.00974436  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1389  CDS  NC_013223  1622669  1623472  804  metal dependent phosphohydrolase  YP_003198254  decreased coverage  3.07916e-05  normal  0.598576  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1390  CDS  NC_013223  1623784  1624887  1104  GTP-binding protein YchF  YP_003198255  decreased coverage  0.00313988  normal  0.853679  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1427  CDS  NC_013223  1658581  1659549  969  DNA polymerase III delta  YP_003198292  decreased coverage  0.000845045  normal  0.101113  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1453  CDS  NC_013223  1682801  1683901  1101  Methyltransferase type 11  YP_003198318  decreased coverage  0.000488747  normal  0.299769  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1694  CDS  NC_013223  1950087  1953977  3891  Tfp pilus assembly protein tip-associated adhesin PilY1-like protein  YP_003198556  normal  0.0847615  decreased coverage  0.00494316  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1696  CDS  NC_013223  1954359  1955006  648  hypothetical protein  YP_003198558  normal  0.115902  decreased coverage  0.00353391  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1716  CDS  NC_013223  1971111  1971842  732  parB-like partition protein  YP_003198578  decreased coverage  7.88777e-05  normal  0.421921  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1719  CDS  NC_013223  1978983  1980374  1392  asparaginyl-tRNA synthetase  YP_003198581  decreased coverage  0.00602659  normal  0.38448  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1778  CDS  NC_013223  2048528  2049874  1347  Peptidase M23  YP_003198640  decreased coverage  2.77073e-06  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1880  CDS  NC_013223  2156067  2157236  1170  filamentation induced by cAMP protein Fic  YP_003198742  hitchhiker  0.000804249  decreased coverage  0.000268134  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_1881  CDS  NC_013223  2157941  2159623  1683  Peptidoglycan-binding lysin domain protein  YP_003198743  normal  0.210829  decreased coverage  0.000286942  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1891  CDS  NC_013223  2173630  2173983  354  transcriptional regulator, XRE family  YP_003198753  decreased coverage  0.00988673  normal  0.0163804  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1906  CDS  NC_013223  2190543  2191277  735  outer membrane assembly lipoprotein YfiO  YP_003198768  decreased coverage  8.17715e-05  normal  0.423153  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_1907  CDS  NC_013223  2191267  2192199  933  Thioredoxin-disulfide reductase  YP_003198769  decreased coverage  0.000488747  normal  0.327863  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_1966  CDS  NC_013223  2252103  2254106  2004  adenylylsulfate reductase subunit alpha  YP_003198828  normal  decreased coverage  0.00115626  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2034  CDS  NC_013223  2333408  2335123  1716  bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein  YP_003198896  unclonable  8.71956e-10  decreased coverage  2.99137e-05  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2044  CDS  NC_013223  2342365  2343129  765  methionine aminopeptidase, type I  YP_003198906  decreased coverage  2.36003e-05  hitchhiker  0.000194463  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2083  CDS  NC_013223  2373307  2374377  1071  peptide chain release factor 1  YP_003198945  decreased coverage  9.63425e-09  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2084  CDS  NC_013223  2374470  2374694  225  ribosomal protein L31  YP_003198946  decreased coverage  2.94546e-11  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2115  CDS  NC_013223  2405994  2406434  441  hypothetical protein  YP_003198977  decreased coverage  1.351e-09  normal  0.442741  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2116  CDS  NC_013223  2406624  2407157  534  Tetratricopeptide TPR_2 repeat protein  YP_003198978  decreased coverage  1.87426e-08  normal  0.445804  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2134  CDS  NC_013223  2431800  2432507  708  protein of unknown function UPF0005  YP_003198996  decreased coverage  1.83428e-09  normal  0.170874  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2424  CDS  NC_013223  2773774  2776218  2445  outer membrane efflux protein  YP_003199284  normal  0.700417  decreased coverage  2.5063e-08  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2425  CDS  NC_013223  2776272  2777840  1569  Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase  YP_003199285  normal  0.48789  decreased coverage  1.00435e-09  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2470  CDS  NC_013223  2830406  2831761  1356  Chromosomal replication initiator DnaA domain protein  YP_003199330  decreased coverage  4.50435e-05  decreased coverage  2.1733e-05  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2471  CDS  NC_013223  2831894  2833075  1182  DNA polymerase III, beta subunit  YP_003199331  decreased coverage  2.69887e-05  decreased coverage  1.86716e-05  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_2472  CDS  NC_013223  2833079  2835463  2385  DNA gyrase, B subunit  YP_003199332  decreased coverage  1.84576e-05  decreased coverage  7.43586e-06  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
-
 
Dret_2523  CDS  NC_013224  16873  17844  972  hypothetical protein  YP_003199381  decreased coverage  0.000860556  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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Dret_2537  CDS  NC_013224  30203  30607  405  transcriptional regulator, MucR family  YP_003199392  decreased coverage  3.23435e-25  normal  Desulfohalobium retbaense DSM 5692  Bacteria 
 
 
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