34 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Hmuk_0030  CDS  NC_013202  24302  26161  1860  hypothetical protein  YP_003175888  decreased coverage  0.00669856  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0124  CDS  NC_013202  125639  126613  975  phosphoesterase RecJ domain protein  YP_003175969  decreased coverage  0.00235664  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0202  CDS  NC_013202  198362  198934  573  isochorismatase hydrolase  YP_003176046  decreased coverage  0.00287334  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0259  CDS  NC_013202  254568  257768  3201  methyl-accepting chemotaxis sensory transducer  YP_003176103  normal  decreased coverage  0.00761831  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0263  CDS  NC_013202  260446  261291  846  aldo/keto reductase  YP_003176107  normal  decreased coverage  0.00520764  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0264  CDS  NC_013202  261413  262384  972  hypothetical protein  YP_003176108  normal  decreased coverage  0.00230811  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0355  CDS  NC_013202  346637  348259  1623  phosphate ABC transporter, inner membrane subunit PstA  YP_003176199  decreased coverage  0.00446882  normal  0.408906  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0502  CDS  NC_013202  472328  474187  1860  PAS/PAC sensor signal transduction histidine kinase  YP_003176343  decreased coverage  0.00154856  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0743  CDS  NC_013202  709347  710195  849  alpha/beta hydrolase fold protein  YP_003176581  decreased coverage  0.00683299  normal  0.316768  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0881  CDS  NC_013202  848806  849846  1041  TRAP transporter solute receptor, TAXI family  YP_003176718  decreased coverage  0.000456072  normal  0.0650778  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_0883  CDS  NC_013202  851331  852716  1386  PKD domain containing protein  YP_003176720  decreased coverage  0.00168906  normal  0.17524  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_1076  CDS  NC_013202  1025391  1025735  345  hypothetical protein  YP_003176910  decreased coverage  1.13197e-06  normal  0.181682  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_1616  CDS  NC_013202  1538234  1538659  426  hypothetical protein  YP_003177437  decreased coverage  6.73965e-06  normal  0.479134  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_1617  CDS  NC_013202  1538775  1539146  372  hypothetical protein  YP_003177438  decreased coverage  1.83827e-06  normal  0.654784  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_1790  CDS  NC_013202  1710193  1711086  894  phosphate ABC transporter ATP-binding protein  YP_003177611  normal  0.530432  decreased coverage  0.00975681  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2019  CDS  NC_013202  1922291  1923259  969  Protein of unknown function DUF1616  YP_003177839  decreased coverage  0.00462585  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2285  CDS  NC_013202  2206533  2206898  366  protein of unknown function DUF35  YP_003178104  decreased coverage  0.0066247  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2286  CDS  NC_013202  2207069  2207548  480  hypothetical protein  YP_003178105  decreased coverage  0.00864478  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2342  CDS  NC_013202  2255030  2256238  1209  glucose sorbosone dehydrogenase  YP_003178161  decreased coverage  0.00995217  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2433  CDS  NC_013202  2336230  2336544  315  hypothetical protein  YP_003178250  normal  decreased coverage  0.00129115  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2434  CDS  NC_013202  2336558  2336896  339  hypothetical protein  YP_003178251  normal  decreased coverage  0.00129864  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2435  CDS  NC_013202  2337670  2338713  1044  halocyanin domain protein  YP_003178252  normal  decreased coverage  0.000875368  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2436  CDS  NC_013202  2338786  2340045  1260  Haloacid dehalogenase domain protein hydrolase type 3  YP_003178253  normal  0.454359  decreased coverage  0.00185111  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2437  CDS  NC_013202  2340070  2340369  300  hypothetical protein  YP_003178254  normal  0.545553  decreased coverage  0.00121501  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2440  CDS  NC_013202  2341880  2343148  1269  hypothetical protein  YP_003178257  normal  decreased coverage  0.00184061  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2534  CDS  NC_013202  2440230  2441177  948  heat shock protein DnaJ domain protein  YP_003178349  decreased coverage  0.00380057  normal  0.256063  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2762  CDS  NC_013202  2653213  2654208  996  translation initiation factor IF-2B subunit delta  YP_003178574  decreased coverage  0.00225031  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2771  CDS  NC_013202  2661710  2662885  1176  dihydropteroate synthase  YP_003178583  decreased coverage  0.00345874  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2923  CDS  NC_013202  2810321  2812225  1905  glycoside hydrolase family 18  YP_003178735  decreased coverage  0.00791055  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_2933  CDS  NC_013202  2820343  2821701  1359  sodium/calcium exchanger membrane region  YP_003178745  decreased coverage  0.00262618  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_3148  CDS  NC_013202  3035898  3037589  1692  glycoside hydrolase family 18  YP_003178960  decreased coverage  0.00268374  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_3235  CDS  NC_013201  24742  25695  954  hypothetical protein  YP_003175695  decreased coverage  0.00546584  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_3237  CDS  NC_013201  26651  27205  555  regulatory protein GntR HTH  YP_003175697  decreased coverage  0.00899856  normal  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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Hmuk_3255  CDS  NC_013201  54805  56049  1245  phosphate transporter  YP_003175713  normal  0.222052  decreased coverage  0.00950804  Halomicrobium mukohataei DSM 12286  Archaea 
 
 
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