216 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sros_0025  CDS  NC_013595  26497  27105  609  hypothetical protein  YP_003335828  decreased coverage  0.0014866  normal  0.629454  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_0026  CDS  NC_013595  27114  29936  2823  hypothetical protein  YP_003335829  decreased coverage  0.00859162  normal  0.584217  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_0356  CDS  NC_013595  343903  346110  2208  hypothetical protein  YP_003336131  decreased coverage  0.00751906  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_0751  CDS  NC_013595  767856  770018  2163  Dipeptidylaminopeptidase/acylaminoacyl- peptidase -like protein  YP_003336513  decreased coverage  0.00616106  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_0786  CDS  NC_013595  802869  803516  648  putative transcriptional regulator, TetR family  YP_003336543  decreased coverage  0.000169887  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1040  CDS  NC_013595  1056140  1056643  504  hypothetical protein  YP_003336783  decreased coverage  0.00980319  normal  0.0473963  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1056  CDS  NC_013595  1073117  1074991  1875  acyl-CoA dehydrogenase  YP_003336799  normal  decreased coverage  0.00257897  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1234  CDS  NC_013595  1263992  1264732  741  ABC transport system permease protein  YP_003336975  normal  decreased coverage  0.000110652  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1235  CDS  NC_013595  1264782  1265501  720  hypothetical protein  YP_003336976  normal  decreased coverage  0.000120217  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1236  CDS  NC_013595  1265588  1267876  2289  ATP-dependent DNA helicase  YP_003336977  normal  decreased coverage  2.43154e-05  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1319    NC_013595  1365026  1365223  198      decreased coverage  0.00189471  normal  0.475259  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1320  CDS  NC_013595  1365220  1366812  1593  carboxyl transferase  YP_003337060  decreased coverage  0.00164381  normal  0.627316  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1407  CDS  NC_013595  1466825  1468192  1368  hypothetical protein  YP_003337144  normal  0.707739  decreased coverage  0.00764846  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1408  CDS  NC_013595  1468197  1469207  1011  AAA family ATPase  YP_003337145  normal  0.174801  decreased coverage  0.00669065  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1409  CDS  NC_013595  1469275  1470435  1161  hypothetical protein  YP_003337146  normal  0.0437742  decreased coverage  0.00798982  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1410  CDS  NC_013595  1470432  1471103  672  hypothetical protein  YP_003337147  normal  0.119922  decreased coverage  0.00637292  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1411  CDS  NC_013595  1471088  1472374  1287  hypothetical protein  YP_003337148  normal  0.184904  decreased coverage  0.00790445  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1435  CDS  NC_013595  1501079  1502281  1203  acyl-CoA dehydrogenase family protein  YP_003337172  decreased coverage  0.00297714  normal  0.111309  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1518  CDS  NC_013595  1604722  1606068  1347  peptidase M20  YP_003337254  normal  0.0128232  decreased coverage  0.000123266  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1767  CDS  NC_013595  1882673  1882873  201  hypothetical protein  YP_003337501  normal  decreased coverage  0.00263313  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1768    NC_013595  1883587  1883905  319      normal  decreased coverage  0.00278386  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_1857  CDS  NC_013595  1971193  1972659  1467  Site-specific recombinase DNA invertase Pin  YP_003337588  normal  0.830217  decreased coverage  0.0036727  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2037  CDS  NC_013595  2189085  2190503  1419  cyclic nucleotide-binding protein  YP_003337765  decreased coverage  0.00604433  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2100  CDS  NC_013595  2253992  2255290  1299  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_003337828  decreased coverage  0.00331224  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2278  CDS  NC_013595  2464143  2465126  984  DNA polymerase III delta subunit-like protein  YP_003338002  decreased coverage  0.00793945  normal  0.210784  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2437  CDS  NC_013595  2658604  2660325  1722  FAD dependent oxidoreductase  YP_003338158  normal  decreased coverage  0.00112879  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2438  CDS  NC_013595  2660446  2662308  1863  Serine/threonine protein kinase-like protein  YP_003338159  normal  decreased coverage  0.00115665  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2439  CDS  NC_013595  2662392  2663417  1026  putative aldo/keto reductase  YP_003338160  normal  0.608138  decreased coverage  0.000840189  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2443  CDS  NC_013595  2667013  2667729  717  hypothetical protein  YP_003338164  decreased coverage  0.00201258  normal  0.0194223  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2464  CDS  NC_013595  2688452  2689498  1047  aminopeptidase  YP_003338183  decreased coverage  0.00184488  normal  0.106032  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2486  CDS  NC_013595  2711474  2712469  996  ribose operon repressor RbsR  YP_003338205  normal  decreased coverage  0.008295  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2487  CDS  NC_013595  2712506  2713939  1434  hypothetical protein  YP_003338206  normal  decreased coverage  0.00182169  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2488  CDS  NC_013595  2714143  2715222  1080  LuxR family transcriptional regulator  YP_003338207  normal  decreased coverage  0.008035  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2489  CDS  NC_013595  2715306  2715794  489  putative transcriptional regulator, MerR family  YP_003338208  normal  decreased coverage  0.00633728  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2490  CDS  NC_013595  2715917  2716795  879  xylose isomerase domain-containing protein  YP_003338209  normal  decreased coverage  0.00709656  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2611  CDS  NC_013595  2841584  2842945  1362  glutamine synthetase  YP_003338324  decreased coverage  0.00742472  normal  0.634853  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2637  CDS  NC_013595  2872213  2872875  663  putative transcriptional regulator, TetR family  YP_003338347  decreased coverage  0.000568428  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2638  CDS  NC_013595  2872939  2873634  696  hypothetical protein  YP_003338348  decreased coverage  0.0006014  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2662  CDS  NC_013595  2898563  2901007  2445  Serine/threonine protein kinase-like protein  YP_003338371  decreased coverage  0.00893552  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2745  CDS  NC_013595  2976586  2979783  3198  hypothetical protein  YP_003338448  decreased coverage  0.00032694  normal  0.196454  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2846  CDS  NC_013595  3092724  3093305  582  hypothetical protein  YP_003338546  normal  0.449385  decreased coverage  0.00911048  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2849  CDS  NC_013595  3095630  3095728  99  hypothetical protein  YP_003338549  normal  decreased coverage  0.00742174  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_2866  CDS  NC_013595  3115986  3117383  1398  UDP-N-acetylmuramyl pentapeptide synthase  YP_003338566  decreased coverage  0.00476658  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3181  CDS  NC_013595  3465508  3468960  3453  NTPase (NACHT family)-like protein  YP_003338869  decreased coverage  0.00494273  normal  0.197936  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3243  CDS  NC_013595  3531121  3531861  741  hypothetical protein  YP_003338929  decreased coverage  0.000222563  normal  0.345814  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3347  CDS  NC_013595  3673017  3673997  981  hypothetical protein  YP_003339029  normal  decreased coverage  0.00327914  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3348  CDS  NC_013595  3673994  3675586  1593  non-ribosomal peptide synthetase  YP_003339030  normal  decreased coverage  0.00415757  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3349  CDS  NC_013595  3675682  3676314  633  hypothetical protein  YP_003339031  normal  decreased coverage  0.0029421  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3350  CDS  NC_013595  3676375  3677661  1287  ABC-type sugar transport systems ATPase components-like protein  YP_003339032  normal  decreased coverage  0.00388587  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3351  CDS  NC_013595  3677969  3679033  1065  LacI family transcription regulator  YP_003339033  normal  0.428373  decreased coverage  0.0034898  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3352  CDS  NC_013595  3679306  3680217  912  ribokinase family sugar kinase  YP_003339034  normal  0.38232  decreased coverage  0.00309735  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3353  CDS  NC_013595  3680286  3681737  1452  major facilitator superfamily transporter  YP_003339035  normal  0.379633  decreased coverage  0.00165452  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3354  CDS  NC_013595  3681732  3685199  3468  Indolepyruvate ferredoxin oxidoreductase  YP_003339036  normal  decreased coverage  0.0073722  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3369  CDS  NC_013595  3699427  3700599  1173  hypothetical protein  YP_003339051  decreased coverage  0.000644747  normal  0.359309  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3432  CDS  NC_013595  3775618  3777945  2328  transcriptional regulator, SARP family  YP_003339112  decreased coverage  0.00818273  normal  0.368034  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3447  CDS  NC_013595  3790393  3790566  174  hypothetical protein  YP_003339126  decreased coverage  0.00293882  normal  0.0934088  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3456  CDS  NC_013595  3802976  3804352  1377  Serine/threonine protein kinase-like protein  YP_003339135  decreased coverage  0.00571523  normal  0.010904  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3472  CDS  NC_013595  3840387  3842081  1695  lipid ABC transporter ATPase/inner membrane protein  YP_003339151  decreased coverage  0.00244165  hitchhiker  0.00122928  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3474  CDS  NC_013595  3843306  3844505  1200  acyl-CoA dehydrogenase  YP_003339153  decreased coverage  0.000130223  hitchhiker  0.00442723  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3530  CDS  NC_013595  3911327  3913276  1950  Dipeptidylaminopeptidase/acylaminoacyl- peptidase -like protein  YP_003339209  decreased coverage  0.00138387  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3552  CDS  NC_013595  3937737  3937904  168  hypothetical protein  YP_003339230  decreased coverage  0.00116548  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3553    NC_013595  3938206  3938400  195      decreased coverage  0.00116548  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3554  CDS  NC_013595  3938397  3938738  342  putative transcriptional regulator, ArsR family  YP_003339231  decreased coverage  0.00159574  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3559  CDS  NC_013595  3944630  3947623  2994  chitinase  YP_003339236  decreased coverage  0.00432534  normal  0.147083  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3585  CDS  NC_013595  3979366  3979983  618  NADPH-dependent FMN reductase  YP_003339262  decreased coverage  0.00310961  normal  0.451104  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3713  CDS  NC_013595  4113458  4114477  1020  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_003339379  decreased coverage  7.73239e-05  normal  0.417331  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3714  CDS  NC_013595  4114479  4115531  1053  Geranylgeranyl pyrophosphate synthase-like protein  YP_003339380  decreased coverage  0.000327917  normal  0.60035  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3716  CDS  NC_013595  4117437  4118699  1263  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_003339382  decreased coverage  0.000326785  normal  0.473194  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3726  CDS  NC_013595  4133245  4134300  1056  hypothetical protein  YP_003339392  decreased coverage  0.000427742  normal  0.649744  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3734  CDS  NC_013595  4144770  4146263  1494  major facilitator superfamily MFS_1  YP_003339400  normal  0.065853  decreased coverage  0.00202838  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3754  CDS  NC_013595  4166107  4167051  945  ornithine cyclodeaminase mu-crystallin  YP_003339419  decreased coverage  0.00106555  normal  0.298115  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3762  CDS  NC_013595  4176121  4176978  858  4-amino-4-deoxychorismate lyase  YP_003339427  decreased coverage  0.00916299  normal  0.36597  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3783  CDS  NC_013595  4206080  4207453  1374  ROK family protein  YP_003339447  decreased coverage  0.00347065  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3784  CDS  NC_013595  4207809  4209341  1533  Glycoprotein endo-alpha-1,2-mannosidase  YP_003339448  decreased coverage  0.00391126  normal  0.836971  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3843  CDS  NC_013595  4282107  4283129  1023  transcriptional regulator  YP_003339505  decreased coverage  0.00298813  normal  0.0397253  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3855  CDS  NC_013595  4293375  4295801  2427  dimethylglycine dehydrogenase precursor  YP_003339516  normal  0.235355  decreased coverage  0.00899155  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3884  CDS  NC_013595  4324627  4325802  1176  ATPase  YP_003339544  decreased coverage  0.000147668  normal  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3921  CDS  NC_013595  4369444  4370778  1335  multidrug efflux protein NorA  YP_003339580  normal  0.0451131  decreased coverage  0.00764846  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3922  CDS  NC_013595  4370923  4371309  387  hypothetical protein  YP_003339581  normal  0.117419  decreased coverage  0.00568747  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3923  CDS  NC_013595  4371413  4371829  417  hypothetical protein  YP_003339582  normal  0.119406  decreased coverage  0.00597108  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3924  CDS  NC_013595  4372191  4373564  1374  succinate-semialdehyde dehydrogenase (NAD(P)+)  YP_003339583  normal  0.292623  decreased coverage  0.00345047  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3925  CDS  NC_013595  4373707  4374960  1254  Glycine hydroxymethyltransferase  YP_003339584  normal  0.991608  decreased coverage  0.00651172  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3926  CDS  NC_013595  4375123  4376322  1200  putative transcriptional regulator, PucR family  YP_003339585  normal  decreased coverage  0.00603602  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_3949  CDS  NC_013595  4394903  4396207  1305  Superfamily I DNA and RNA helicase and helicase subunits-like protein  YP_003339603  decreased coverage  3.19399e-05  hitchhiker  0.00989255  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4012  CDS  NC_013595  4467115  4467702  588  TetR family transcriptional regulator  YP_003339663  decreased coverage  0.00441742  normal  0.139253  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4030  CDS  NC_013595  4487327  4488067  741  putative transcriptional regulator, GntR family  YP_003339681  decreased coverage  0.000148337  normal  0.107748  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4040  CDS  NC_013595  4497413  4498720  1308  major facilitator transporter  YP_003339691  normal  0.248694  decreased coverage  0.0016848  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4041  CDS  NC_013595  4498717  4499841  1125  hydantoinase  YP_003339692  normal  0.711164  decreased coverage  0.0015292  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4042  CDS  NC_013595  4499877  4500911  1035  hypothetical protein  YP_003339693  normal  0.277323  decreased coverage  0.00123714  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4043  CDS  NC_013595  4500940  4502454  1515  putative transcriptional regulator, PucR family  YP_003339694  normal  0.0389127  decreased coverage  0.00142198  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4044  CDS  NC_013595  4502569  4502670  102  hypothetical protein  YP_003339695  normal  0.0287453  decreased coverage  0.000794618  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4045  CDS  NC_013595  4502735  4503481  747  hypothetical protein  YP_003339696  hitchhiker  0.00508612  decreased coverage  0.00102344  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4046  CDS  NC_013595  4503684  4505363  1680  5-oxoprolinase (ATP-hydrolyzing)  YP_003339697  normal  0.0146598  decreased coverage  0.00136288  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4047  CDS  NC_013595  4505360  4507390  2031  5-oxoprolinase (ATP-hydrolyzing)  YP_003339698  normal  0.0166577  decreased coverage  0.00142198  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4048  CDS  NC_013595  4507489  4508118  630  hypothetical protein  YP_003339699  normal  0.173399  decreased coverage  0.000882934  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4060  CDS  NC_013595  4519352  4522531  3180  hypothetical protein  YP_003339711  decreased coverage  0.00663013  normal  0.0372283  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4146  CDS  NC_013595  4615413  4617101  1689  All-trans-retinol 13,14-reductase  YP_003339793  normal  0.559453  decreased coverage  0.00452261  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4147  CDS  NC_013595  4617104  4617988  885  3-hydroxyisobutyrate dehydrogenase family protein  YP_003339794  normal  0.191948  decreased coverage  0.00292486  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4148  CDS  NC_013595  4618341  4618667  327  hypothetical protein  YP_003339795  normal  0.33742  decreased coverage  0.00216926  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
Sros_4149  CDS  NC_013595  4618660  4619112  453  hypothetical protein  YP_003339796  normal  0.26535  decreased coverage  0.0023385  Streptosporangium roseum DSM 43021  Bacteria 
 
 
-
 
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