56 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ksed_00180  CDS  NC_013169  16616  19471  2856  protein kinase family protein with PASTA domain  YP_003147881  decreased coverage  0.000304613  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_04790  CDS  NC_013169  473453  474859  1407  O-acetylhomoserine sulfhydrolase  YP_003148314  decreased coverage  0.00316702  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_08270  CDS  NC_013169  841362  843152  1791  ABC-type multidrug transport system, ATPase and permease component  YP_003148646  decreased coverage  0.00203006  normal  0.441586  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_08640  CDS  NC_013169  878613  879938  1326  hypothetical protein  YP_003148683  decreased coverage  0.00452751  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_09750  CDS  NC_013169  1004870  1006354  1485  HNH endonuclease  YP_003148786  decreased coverage  3.78313e-06  normal  0.0136835  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_10330  CDS  NC_013169  1057606  1058466  861  Flp pilus assembly protein TadB  YP_003148843  decreased coverage  0.00309565  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_10830  CDS  NC_013169  1108026  1108634  609  putative methyltransferase  YP_003148890  decreased coverage  0.000726134  normal  0.125771  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_11180  CDS  NC_013169  1142058  1142873  816  metalloendopeptidase-like membrane protein  YP_003148923  decreased coverage  0.00950153  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_11840  CDS  NC_013169  1210008  1211414  1407  glycyl-tRNA synthetase  YP_003148988  decreased coverage  0.000800535  normal  0.839416  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12050  CDS  NC_013169  1229831  1231108  1278  glycerophosphoryl diester phosphodiesterase  YP_003149007  decreased coverage  0.0051177  normal  0.272152  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12060  CDS  NC_013169  1231175  1233922  2748  pyruvate dehydrogenase subunit E1  YP_003149008  decreased coverage  0.00682926  normal  0.280194  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12140  CDS  NC_013169  1239374  1239844  471  putative calcium-binding protein  YP_003149014  decreased coverage  0.00153272  normal  0.0976113  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12210  CDS  NC_013169  1247288  1248628  1341  L-glutamine synthetase  YP_003149021  decreased coverage  0.000380356  normal  0.117276  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12390  CDS  NC_013169  1271284  1273239  1956  DNA repair protein RecN  YP_003149036  decreased coverage  0.00374737  normal  0.634901  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12540  CDS  NC_013169  1291110  1292114  1005  shikimate 5-dehydrogenase  YP_003149051  decreased coverage  0.00205236  normal  0.478593  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12800  CDS  NC_013169  1322193  1322645  453  Protein of unknown function (DUF2581)  YP_003149077  normal  0.0224301  decreased coverage  0.00565206  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_12810  CDS  NC_013169  1322669  1323859  1191  predicted membrane protein  YP_003149078  normal  0.157231  decreased coverage  0.00366432  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_12820  CDS  NC_013169  1323856  1324449  594  hypothetical protein  YP_003149079  normal  0.270061  decreased coverage  0.00529228  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_13290  CDS  NC_013169  1379809  1380384  576  hypothetical protein  YP_003149123  decreased coverage  0.00774625  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_13420  CDS  NC_013169  1391937  1392896  960  predicted metalloprotease  YP_003149136  decreased coverage  0.00442634  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_13430  CDS  NC_013169  1393067  1394590  1524  nitrate/nitrite transporter  YP_003149137  decreased coverage  0.0010455  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14030  CDS  NC_013169  1448451  1451312  2862  superfamily II RNA helicase  YP_003149195  decreased coverage  0.00460424  normal  0.326096  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14070  CDS  NC_013169  1453350  1454918  1569  predicted TIM-barrel fold metal-dependent hydrolase  YP_003149199  decreased coverage  0.00157439  normal  0.408471  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14170  CDS  NC_013169  1464895  1465830  936  hypothetical protein  YP_003149209  hitchhiker  0.00613432  decreased coverage  0.00859311  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14180  CDS  NC_013169  1465855  1466406  552  hypothetical protein  YP_003149210  hitchhiker  0.000611643  decreased coverage  0.0071615  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14200  CDS  NC_013169  1468164  1468847  684  transcriptional regulator, TetR family  YP_003149212  hitchhiker  9.18467e-05  decreased coverage  0.00704922  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14210  CDS  NC_013169  1468844  1469776  933  conserved hypothetical protein TIGR01777  YP_003149213  hitchhiker  0.000253357  decreased coverage  0.00429044  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14220  CDS  NC_013169  1469867  1470736  870  putative homoserine kinase type II (protein kinase fold)  YP_003149214  hitchhiker  0.00035029  decreased coverage  0.00830437  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14230  CDS  NC_013169  1470726  1471496  771  hypothetical protein  YP_003149215  hitchhiker  0.00309565  decreased coverage  0.00445138  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_14280  CDS  NC_013169  1475842  1477032  1191  glycerate kinase  YP_003149220  decreased coverage  5.70843e-05  normal  0.0813973  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_15530  CDS  NC_013169  1589522  1590286  765  hypothetical protein  YP_003149333  decreased coverage  0.00151518  normal  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_15890  CDS  NC_013169  1632286  1634049  1764  acyl-CoA synthetase/AMP-acid ligase  YP_003149369  decreased coverage  0.000158213  normal  0.0863462  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_16240  CDS  NC_013169  1670047  1671858  1812  cytochrome c oxidase, subunit I  YP_003149404  decreased coverage  0.0056616  normal  0.613337  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_17290  CDS  NC_013169  1791561  1792070  510  hypothetical protein  YP_003149507  decreased coverage  0.000859041  hitchhiker  0.00343811  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_17300  CDS  NC_013169  1792144  1792575  432  hypothetical protein  YP_003149508  hitchhiker  0.00278724  decreased coverage  0.00345743  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_17470  CDS  NC_013169  1815639  1817381  1743  ATPase component of various ABC-type transport systems with duplicated ATPase domain  YP_003149524  decreased coverage  0.00927794  normal  0.238843  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_17610  CDS  NC_013169  1834076  1834828  753  ABC-type antimicrobial peptide transport system, ATPase component  YP_003149538  decreased coverage  0.00262944  normal  0.585837  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_18050  CDS  NC_013169  1876984  1878717  1734  hypothetical protein  YP_003149574  decreased coverage  4.18777e-08  normal  0.174472  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_18580  CDS  NC_013169  1933235  1933735  501  dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme  YP_003149625  decreased coverage  0.0014086  normal  0.811486  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_19280  CDS  NC_013169  2011324  2011827  504  molybdopterin adenylyltransferase  YP_003149693  decreased coverage  0.00140753  normal  0.0261749  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19490  CDS  NC_013169  2028007  2030055  2049  uncharacterized vancomycin resistance protein  YP_003149714  normal  0.0459635  decreased coverage  0.00355972  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19500  CDS  NC_013169  2030052  2031506  1455  conserved protein of DIM6/NTAB family  YP_003149715  normal  0.224099  decreased coverage  0.00249696  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19650  CDS  NC_013169  2048113  2049423  1311  diaminobutyrate--2-oxoglutarate aminotransferase  YP_003149730  normal  0.684413  decreased coverage  0.00220172  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19660  CDS  NC_013169  2049495  2049911  417  L-ectoine synthase  YP_003149731  normal  0.942156  decreased coverage  0.00151851  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19750  CDS  NC_013169  2059622  2059939  318  cation/cationic drug transporter  YP_003149738  decreased coverage  0.00047223  normal  0.0181194  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_19760  CDS  NC_013169  2060087  2060857  771  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  YP_003149739  decreased coverage  0.000927245  normal  0.0200652  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_19840  CDS  NC_013169  2068376  2069050  675  hypothetical protein  YP_003149746  normal  decreased coverage  0.00128343  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_19850  CDS  NC_013169  2069154  2070872  1719  hypothetical protein  YP_003149747  normal  0.974679  decreased coverage  0.00208354  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_19860  CDS  NC_013169  2070987  2071913  927  cation diffusion facilitator family transporter  YP_003149748  normal  0.163356  decreased coverage  0.00158825  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_19890  CDS  NC_013169  2073085  2076009  2925  P-type ATPase, translocating  YP_003149751  normal  0.0486105  decreased coverage  0.0039652  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_20100  CDS  NC_013169  2091891  2092904  1014  predicted membrane protein  YP_003149771  decreased coverage  0.00191645  normal  0.0169787  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
-
 
Ksed_21430  CDS  NC_013169  2213125  2214522  1398  isochorismate synthase family protein  YP_003149896  normal  0.0130324  decreased coverage  7.37773e-06  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_21550  CDS  NC_013169  2230233  2232221  1989  endothelin-converting enzyme  YP_003149907  decreased coverage  0.00980776  hitchhiker  0.000469406  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_21640  CDS  NC_013169  2243428  2244681  1254  trypsin-like serine protease with C-terminal PDZ domain  YP_003149916  decreased coverage  0.00345268  normal  0.0571371  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_21810  CDS  NC_013169  2258268  2259161  894  hypothetical protein  YP_003149931  decreased coverage  6.54709e-06  normal  0.272152  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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Ksed_22270  CDS  NC_013169  2307980  2309212  1233  arabinose efflux permease family protein  YP_003149975  decreased coverage  0.00681057  normal  0.389193  Kytococcus sedentarius DSM 20547  Bacteria 
 
 
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