36 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Svir_02900  CDS  NC_013159  289310  289702  393  hypothetical protein  YP_003132199  decreased coverage  0.00721507  normal  0.747416  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_02910  CDS  NC_013159  289716  290057  342  hypothetical protein  YP_003132200  decreased coverage  0.00769204  normal  0.757279  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_04660  CDS  NC_013159  457872  458165  294  Co-chaperonin GroES  YP_003132368  decreased coverage  0.00798314  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_10460  CDS  NC_013159  1076380  1077120  741  lipoate-protein ligase B  YP_003132929  decreased coverage  0.00811076  normal  0.015008  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_12300  CDS  NC_013159  1267893  1268822  930  monosaccharide ABC transporter membrane protein  YP_003133106  decreased coverage  0.00275786  normal  0.739873  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_14400  CDS  NC_013159  1486928  1487809  882  hypothetical protein  YP_003133307  decreased coverage  0.00780659  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_14560  CDS  NC_013159  1503085  1503444  360  predicted nucleic-acid-binding protein implicated in transcription termination  YP_003133323  decreased coverage  0.00191039  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_15870  CDS  NC_013159  1628951  1629955  1005  glyceraldehyde-3-phosphate dehydrogenase  YP_003133449  decreased coverage  5.89775e-05  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_17680  CDS  NC_013159  1832737  1833525  789  precorrin-4 C11-methyltransferase  YP_003133621  decreased coverage  0.00107277  normal  0.918127  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_18880  CDS  NC_013159  2006527  2007375  849  formyltetrahydrofolate deformylase  YP_003133737  decreased coverage  0.0052951  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19180  CDS  NC_013159  2039865  2040878  1014  formate dehydrogenase beta subunit  YP_003133766  decreased coverage  0.0039184  normal  0.491864  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19630  CDS  NC_013159  2091593  2093563  1971  heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting  YP_003133809  decreased coverage  0.00267622  normal  0.0638812  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19840  CDS  NC_013159  2115952  2116872  921  uncharacterized MccF-like protein (microcin C7 resistance)  YP_003133829  normal  0.261069  decreased coverage  4.58463e-05  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19850  CDS  NC_013159  2117105  2117695  591  phospholipid N-methyltransferase  YP_003133830  normal  0.0199133  decreased coverage  4.02222e-05  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19920  CDS  NC_013159  2125275  2126102  828  D-aminopeptidase DppA  YP_003133837  decreased coverage  5.08019e-07  decreased coverage  4.87782e-05  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_19930  CDS  NC_013159  2126157  2127461  1305  hypothetical protein  YP_003133838  decreased coverage  7.70232e-07  decreased coverage  7.00572e-05  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20230  CDS  NC_013159  2157547  2159094  1548  acetyl-CoA acetyltransferase  YP_003133868  decreased coverage  0.00768675  normal  0.711797  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20760  CDS  NC_013159  2209708  2210475  768  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  YP_003133916  decreased coverage  0.00301045  normal  0.0643774  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20810  CDS  NC_013159  2224446  2225465  1020  ABC-type Fe3+-siderophore transport system, permease component  YP_003133921  normal  decreased coverage  0.00921344  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20840  CDS  NC_013159  2227469  2227756  288  aryl carrier domain protein  YP_003133924  normal  0.630177  decreased coverage  0.00638863  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20850  CDS  NC_013159  2227756  2228421  666  isochorismate hydrolase  YP_003133925  normal  decreased coverage  0.00852514  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_20910  CDS  NC_013159  2236303  2236827  525  aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein  YP_003133931  normal  0.670207  decreased coverage  0.00505863  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_21220  CDS  NC_013159  2281794  2282357  564  peroxiredoxin  YP_003133962  decreased coverage  0.00898795  normal  0.214618  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_22000  CDS  NC_013159  2369164  2370606  1443  sphingosine/diacylglycerol kinase-like enzyme  YP_003134035  decreased coverage  0.00559373  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_23790  CDS  NC_013159  2571000  2571857  858  hypothetical protein  YP_003134205  decreased coverage  2.60042e-06  normal  0.333633  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_24120  CDS  NC_013159  2601463  2602704  1242  ribonuclease D  YP_003134235  normal  0.0108272  decreased coverage  0.00823573  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_24130  CDS  NC_013159  2602717  2603805  1089  signal transduction histidine kinase  YP_003134236  normal  0.0242619  decreased coverage  0.00839844  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_24140  CDS  NC_013159  2603853  2604548  696  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  YP_003134237  decreased coverage  0.00201668  decreased coverage  0.0036779  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_24150  CDS  NC_013159  2604600  2606537  1938  1-deoxy-D-xylulose-5-phosphate synthase  YP_003134238  decreased coverage  0.00848147  normal  0.0118105  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_30030  CDS  NC_013159  3246913  3248376  1464  drug resistance transporter, EmrB/QacA subfamily  YP_003134807  decreased coverage  0.00171806  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_30040  CDS  NC_013159  3248449  3249030  582  hypothetical protein  YP_003134808  decreased coverage  0.000857921  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_30110  CDS  NC_013159  3256910  3258319  1410  putative amidase  YP_003134815  decreased coverage  0.00374017  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_34700  CDS  NC_013159  3773717  3774796  1080  glutamine--fructose-6-phosphate transaminase  YP_003135259  decreased coverage  0.00834957  normal  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_36630  ncRNA  NC_013159  3983798  3983899  102  bacterial signal recognition particle RNA    decreased coverage  0.00364935  normal  0.318237  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_36640  CDS  NC_013159  3983975  3984226  252  protein of unknown function (DUF397)  YP_003135442  decreased coverage  0.0015395  normal  0.323981  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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Svir_39100  CDS  NC_013159  4231717  4233570  1854  GTPase of unknown function  YP_003135679  decreased coverage  9.74304e-05  normal  0.356305  Saccharomonospora viridis DSM 43017  Bacteria 
 
 
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