47 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Jden_0228  CDS  NC_013174  242770  243744  975  ABC transporter related  YP_003160205  decreased coverage  0.00487637  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0256  CDS  NC_013174  272115  273461  1347  major facilitator superfamily MFS_1  YP_003160233  decreased coverage  0.0048883  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0301  CDS  NC_013174  321837  322040  204  cold-shock DNA-binding domain protein  YP_003160276  decreased coverage  0.00253542  normal  0.0688177  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0302  CDS  NC_013174  322236  322916  681  GCN5-related N-acetyltransferase  YP_003160277  decreased coverage  0.00317404  normal  0.0799447  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0315  CDS  NC_013174  335703  337421  1719  binding-protein-dependent transport systems inner membrane component  YP_003160290  hitchhiker  1.3975e-06  decreased coverage  0.00476885  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0316  CDS  NC_013174  337418  338446  1029  ABC transporter related  YP_003160291  unclonable  4.65057e-10  decreased coverage  0.0034539  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0317  CDS  NC_013174  338471  338779  309  hypothetical protein  YP_003160292  unclonable  1.91328e-11  decreased coverage  0.00259322  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0513  CDS  NC_013174  557113  558456  1344  extracellular solute-binding protein family 1  YP_003160480  decreased coverage  3.8068e-08  hitchhiker  0.000703825  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0514  CDS  NC_013174  558803  560110  1308  glycoside hydrolase, clan GH-D  YP_003160481  hitchhiker  2.26064e-06  decreased coverage  0.000231347  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0516  CDS  NC_013174  561694  562794  1101  Arabinan endo-1,5-alpha-L-arabinosidase  YP_003160483  hitchhiker  1.12186e-06  decreased coverage  0.000226611  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0572  CDS  NC_013174  620288  621355  1068  adenosine deaminase  YP_003160539  normal  decreased coverage  0.00357349  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0573  CDS  NC_013174  621438  621941  504  protoporphyrinogen oxidase  YP_003160540  normal  decreased coverage  0.00307777  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0626  CDS  NC_013174  665776  667356  1581  YjeF-family domain protein  YP_003160593  decreased coverage  0.000297999  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0852  CDS  NC_013174  918446  919498  1053  adenylate/guanylate cyclase  YP_003160817  decreased coverage  4.0667e-09  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0853  CDS  NC_013174  919461  920273  813  protein of unknown function DUF159  YP_003160818  decreased coverage  1.82403e-07  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_0854  CDS  NC_013174  920288  920935  648  peptide deformylase  YP_003160819  decreased coverage  7.49472e-08  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_1179  CDS  NC_013174  1252492  1253703  1212  band 7 protein  YP_003161138  normal  0.473377  decreased coverage  0.000901683  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1180  CDS  NC_013174  1253813  1254661  849  tRNA/rRNA methyltransferase (SpoU)  YP_003161139  normal  0.452059  decreased coverage  0.000681553  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1186  CDS  NC_013174  1259391  1261040  1650  DNA repair nucleotidyltransferase/DNA polymerase  YP_003161145  decreased coverage  7.07508e-06  normal  0.0119021  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1196  CDS  NC_013174  1274176  1275066  891  protein of unknown function DUF75  YP_003161155  decreased coverage  0.00179103  normal  0.0638399  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1283  CDS  NC_013174  1372862  1373836  975  ATPase associated with various cellular activities AAA_3  YP_003161242  decreased coverage  7.85499e-05  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1390  CDS  NC_013174  1487206  1488447  1242  putative ATP-grasp protein  YP_003161346  decreased coverage  0.00627885  normal  0.224685  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1625  CDS  NC_013174  1753726  1754262  537  hypothetical protein  YP_003161576  decreased coverage  0.000237146  normal  0.242966  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1653  CDS  NC_013174  1785456  1788512  3057  ribonuclease, Rne/Rng family  YP_003161604  normal  decreased coverage  0.000358703  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1674  CDS  NC_013174  1804732  1806984  2253  DEAD/DEAH box helicase domain protein  YP_003161624  decreased coverage  5.86532e-06  normal  0.0155467  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1675  CDS  NC_013174  1807002  1808540  1539  Dak phosphatase  YP_003161625  decreased coverage  3.83115e-07  hitchhiker  0.00671011  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1694  CDS  NC_013174  1828009  1829490  1482  amino acid carrier protein  YP_003161643  normal  0.660605  decreased coverage  0.00111847  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1695  CDS  NC_013174  1829586  1832207  2622  DEAD/DEAH box helicase domain protein  YP_003161644  normal  0.558592  decreased coverage  0.000760063  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1765  CDS  NC_013174  1924389  1926848  2460  hypothetical protein  YP_003161711  decreased coverage  0.00969873  normal  0.0262945  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1796  CDS  NC_013174  1960291  1961409  1119  CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase  YP_003161742  decreased coverage  0.00841895  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1856  CDS  NC_013174  2030511  2032019  1509  Phosphomannomutase  YP_003161802  normal  0.114337  decreased coverage  0.00605536  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_1944  CDS  NC_013174  2132482  2133099  618  transcriptional regulator, TetR family  YP_003161887  decreased coverage  0.00538978  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2055  CDS  NC_013174  2243028  2244659  1632  chaperonin GroEL  YP_003161996  decreased coverage  0.00350508  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2072  CDS  NC_013174  2264103  2265398  1296  extracellular solute-binding protein family 1  YP_003162013  decreased coverage  2.38529e-08  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2402    NC_013174  2570625  2571667  1043      decreased coverage  0.00356863  normal  0.998447  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2403  CDS  NC_013174  2571733  2572662  930  Acetyl xylan esterase  YP_003162338  decreased coverage  0.00763458  normal  0.564898  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2404  CDS  NC_013174  2572669  2573718  1050  transcriptional regulator, LacI family  YP_003162339  decreased coverage  0.000976758  normal  Jonesia denitrificans DSM 20603  Bacteria 
 
 
-
 
Jden_2449  CDS  NC_013174  2626507  2627556  1050  ATPase associated with various cellular activities AAA_3  YP_003162384  normal  0.281156  decreased coverage  0.00339489  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2450  CDS  NC_013174  2627575  2628471  897  protein of unknown function DUF58  YP_003162385  normal  0.675441  decreased coverage  0.00731515  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2454  CDS  NC_013174  2631435  2632433  999  von Willebrand factor type A  YP_003162389  normal  decreased coverage  0.00561279  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2455  CDS  NC_013174  2632436  2633482  1047  hypothetical protein  YP_003162390  normal  0.927217  decreased coverage  0.005432  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2463  CDS  NC_013174  2644410  2646275  1866  HSP90 family protein  YP_003162398  normal  0.0779682  decreased coverage  0.00689697  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2464  CDS  NC_013174  2646427  2646816  390  transcriptional regulator, ArsR family  YP_003162399  normal  0.0703378  decreased coverage  0.00378407  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2465  CDS  NC_013174  2646813  2648453  1641  sulphate transporter  YP_003162400  normal  0.320203  decreased coverage  0.00514746  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_2466  CDS  NC_013174  2648541  2650091  1551  catalytic domain of components of various dehydrogenase complexes  YP_003162401  normal  0.606926  decreased coverage  0.005432  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_R0017  tRNA  NC_013174  622045  622120  76  tRNA-Trp    normal  0.735607  decreased coverage  0.0025473  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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Jden_R0018  tRNA  NC_013174  622259  622331  73  tRNA-Trp    normal  0.954485  decreased coverage  0.00256285  Jonesia denitrificans DSM 20603  Bacteria 
 
 
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